PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G154100.1
Common NamePOPTR_0010s16380g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28499.4 Da    PI: 9.2384
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G154100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.6e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Potri.010G154100.1  9 KRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIVFSHKGKLFEYST 59
                        79***********************************************96 PP
2K-box1027.8e-34781744100
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         ++ ++++   + +++ e+++Lk+++e Lqr++R++lGedL+s+slkeLq+Leqq++++lk+iR++Kn+l+ ++i+elq+kek++q +n++L
  Potri.010G154100.1  78 RQLVATDLDSQGNWTLEYNRLKAKVELLQRNHRNYLGEDLDSMSLKELQNLEQQIDTALKHIRARKNHLMSQSISELQRKEKAIQVQNNML 168
                         5555555566789****************************************************************************** PP

               K-box  95 rkklee 100
                          k+++e
  Potri.010G154100.1 169 VKQIKE 174
                         ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.127161IPR002100Transcription factor, MADS-box
CDDcd002654.36E-41279No hitNo description
SuperFamilySSF554557.19E-34291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-2886172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.58688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KANEISVLCD AEVALIVFSH KGKLFEYSTD  60
DSMEKILERY ERYSYAERQL VATDLDSQGN WTLEYNRLKA KVELLQRNHR NYLGEDLDSM  120
SLKELQNLEQ QIDTALKHIR ARKNHLMSQS ISELQRKEKA IQVQNNMLVK QIKEKEKNDK  180
ALAQPAFWDL QDHGPNASSF LLSQPAGLPL PCLNIGGSHQ EEAPEARRNE LGHTLEPIYS  240
FHLGGYGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22185184MEF2 CHIMERA
6byy_B1e-22185184MEF2 CHIMERA
6byy_C1e-22185184MEF2 CHIMERA
6byy_D1e-22185184MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.120040.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G154100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6159660.0AY615966.1 Populus balsamifera subsp. trichocarpa APETALA1-like MADS-box PTAP1-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316076.10.0truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ6E6S71e-132AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ6IWY20.0Q6IWY2_POPTR; APETALA1-like MADS-box PTAP1-2
STRINGcassava4.1_029935m1e-140(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-114MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]