PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G154000.1
Common NamePOPTR_0010s16370g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 1031aa    MW: 114785 Da    PI: 7.9268
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G154000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.37.1e-41149226178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Potri.010G154000.1 149 VCQVEDCRADLSNAKDYHRRHKVCDVHSKASMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 226
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-32144211IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.206147224IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-37148229IPR004333Transcription factor, SBP-box
PfamPF031104.7E-29150223IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.3E-9795947IPR020683Ankyrin repeat-containing domain
SMARTSM00248470797826IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.206.4E-9801929IPR020683Ankyrin repeat-containing domain
CDDcd002041.02E-7802914No hitNo description
SMARTSM0024842854884IPR002110Ankyrin repeat
SMARTSM00248330894923IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MEAKMGGKSR HLYGPVLSDL KAVGKKSLEW DLNDWKWDGD LFTATPLNSV PSDCRSRQLF  60
STGPELPEKA GLSNSSSSCS DDNDNLGDDK GKRELEKRRR AVFVEDEDLN DAAGSLNLKL  120
GGQVYPIMNE DAKSGKKTKV TMTASNRAVC QVEDCRADLS NAKDYHRRHK VCDVHSKASM  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPENVF NEGSLNDEKG  240
SSYLLISLLR ILSNLQSNNS DQTKDQDLLS HLLRSLANLA GTTNGRSLSG LLQGSPGLVN  300
AGATVGNLEK VQDALTNGPE SARPSSSASK KDDCINSQDL PRPLGQCGTV PVPDLVQKRI  360
LDNDVQGGHQ AHSGPQSIPL FLSRNKLPAK PNEPDATVGR IKLNNFDLNN VYDNSQDYVE  420
NLDRSHAPVS TGMGSFNCPL WVRSDSHKTN LPHMSGYSDS TPSQSPSSSS GEAQGRTDRI  480
VFKLFGKDPN DFPVALRTQI LQWLSHSPTD IESYIRPGCI ILTIYLCLEK TKWEEVCLDL  540
GASLSRLLDT FRDSFWQTGW VYVRAQNSVS FIHNGRVVLD TPLPIKSNKN CRISSITPIA  600
VSLSERTQFV VRGFNIVRPV TRVLCAVEGK YLVQETCYDL MDGAATMNEH GKPQCLNFQC  660
SVPNFVGRGF IEIEDHSLSS SFFPFIVAEP EVCSEIRTLE DAIQVAETTT DIHALAETME  720
IKNQSLDFIH EMGWLLHRSH LKFRLGQLDP FPFKRFEWLV QFSMNRDWCA VVRKLLAIMI  780
DGTVDAGEHS SIELALFNMG LLHRAVQRNC RPMVELLLRY TPDKQLGGPG TQQNQLADEN  840
NSRFMFKPDV AGPAGLTPLH VAACRDGAEN VLDALTDDPG LVGIDAWKRT RDNTGLTPYD  900
YACLRGHYSY IHLIQRKINK KSESGHVVLD IPSSLADYNS KQKDGHKLPK FAVLHTEKIE  960
MKAMQQHLKV CERKLVYGAA RTSLVYRPAM LSMVAIAAVC VCVALLFKSS PEVLYVFQPF  1020
RWEKLKYGSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301492231084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218224KRRRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G154000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091030.0AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378563.20.0squamosa promoter-binding-like protein 1 isoform X1
RefseqXP_006378564.20.0squamosa promoter-binding-like protein 1 isoform X1
TrEMBLA0A2K1YUH60.0A0A2K1YUH6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16370.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1