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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G153100.5 | ||||||||
Common Name | POPTR_0010s16290g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CAMTA | ||||||||
Protein Properties | Length: 990aa MW: 110243 Da PI: 7.7385 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 181.5 | 1e-56 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +e k+rwl+++ei++iL n++k++lt+e++ rp gs++L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n+ Potri.010G153100.5 20 EEaKHRWLRPTEILEILRNYQKFKLTAEPPARPAAGSMFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNE 110 4559*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrrcyw+L+ +le+iv+vhy+evk Potri.010G153100.5 111 NFQRRCYWMLDGQLEHIVFVHYREVK 136 ***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.708 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.7E-81 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.5E-50 | 21 | 134 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.8E-6 | 437 | 526 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 4.2E-16 | 438 | 524 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 7.1E-6 | 438 | 523 | IPR002909 | IPT domain |
Pfam | PF12796 | 1.6E-7 | 618 | 702 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-16 | 631 | 734 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 8.1E-17 | 634 | 763 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.86E-16 | 634 | 731 | No hit | No description |
PROSITE profile | PS50088 | 8.523 | 639 | 671 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 890 | 639 | 668 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 17.714 | 639 | 733 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3.9E-4 | 672 | 701 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.606 | 672 | 704 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3100 | 711 | 740 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.59E-8 | 842 | 897 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.45 | 846 | 868 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.627 | 847 | 876 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0043 | 848 | 867 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 5.1E-4 | 869 | 891 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.633 | 870 | 894 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 7.2E-5 | 873 | 891 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 990 aa Download sequence Send to blast |
MAETRRYIPD HTINIEQILE EAKHRWLRPT EILEILRNYQ KFKLTAEPPA RPAAGSMFLF 60 DRKALRYFRK DGHRWRKKKD GKTVREAHEK LKAGSVDVLH CYYAHGEDNE NFQRRCYWML 120 DGQLEHIVFV HYREVKEGYK SGVSRLLEDS GTQVENLQPS PVTSFAQAAS PASTVQTSYA 180 SSPNRIDWNG KALSSEFEDV DSRNGPGTSS LAQSIHGSMS HNSSLLSPRV EGFHVLPKNP 240 PGSWLAGAKF DLGTQSSLLP EISSSERSVS RLPGQKFFVD QPGGAEFITN KLTDATLEGI 300 AVPDTVVSAT GLITDRTATP QNVIQELDFN LISPQLHNLS GTQTVAASTA QVENKANDGG 360 ANNIESGELK KLDSFGRWMD KEIGGDCDDS LMASDSGNYW STLSAENEDK EVSSLSHHMQ 420 LDTDSLGPSL SQDQLFSIRD FSPDWAYSGV DTKVLIIGTF LGSKKFSSET KWGCMFGEIE 480 VSAEVLNDCV IRCQVPQHAP GRVPFYITCR NRLSCSEVRE FEYRENPFGT ASLPAESAQQ 540 EEILFQMRLS KLLYLGPGMK SSNCSIEDCE RCKISTLFSL RNDSKRDLGK VQDNCMVAVG 600 DGIGFRDKLI QSLLMDRLCE WLACKVHEGG KGSDVLDGEG QGVIHLAASL GYEWAMDLIV 660 AAGGNPNFRD ARGRTALHWA SYFGREETVI ALIRLDADPT AVDDPNPAFP GGQSAADLAS 720 CRGHKGISGY LAEAFLSRHL SSLKIDQNEM DHDTAAMAAE KETDIAAQVA SLSSKGEYEL 780 LSLKGSLAAV RKSARAVALI HAAYRTSSFR QRQLAKSSDD ISEISLDLAA LGSLNMVQRR 840 GHFEDYLHSA AVKIQQKYRG WKGRKDFLKI RNRIVKIQAH VRGHQVRKQY KKVVWSVGIV 900 EKAILRWRRK RTGLRGFRLE KKIGDVKPES ENADEYDFLR ISRKQKFAGV EKALARVTSM 960 VRHPEAREQY MRMVTKFENI KVMLYSSEP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G153100.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466825.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X4 | ||||
TrEMBL | A0A2K1YUG0 | 0.0 | A0A2K1YUG0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s16290.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G153100.5 |
Entrez Gene | 7485869 |