![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.010G153100.2 | ||||||||
Common Name | POPTR_0010s16290g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 965aa MW: 107650 Da PI: 7.3612 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 181.5 | 9.6e-57 | 22 | 138 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +e k+rwl+++ei++iL n++k++lt+e++ rp gs++L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n+ Potri.010G153100.2 22 EEaKHRWLRPTEILEILRNYQKFKLTAEPPARPAAGSMFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNE 112 4559*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrrcyw+L+ +le+iv+vhy+evk Potri.010G153100.2 113 NFQRRCYWMLDGQLEHIVFVHYREVK 138 ***********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.708 | 17 | 143 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.7E-81 | 20 | 138 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.4E-50 | 23 | 136 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.7E-6 | 404 | 493 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 6.9E-6 | 405 | 490 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 4.02E-16 | 405 | 491 | IPR014756 | Immunoglobulin E-set |
Pfam | PF12796 | 1.5E-7 | 585 | 669 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-16 | 598 | 701 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.64E-16 | 601 | 698 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 8.3E-17 | 601 | 730 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.523 | 606 | 638 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 890 | 606 | 635 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 17.714 | 606 | 700 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3.9E-4 | 639 | 668 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.606 | 639 | 671 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3100 | 678 | 707 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.54E-8 | 809 | 864 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.45 | 813 | 835 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.627 | 814 | 843 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0042 | 815 | 834 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 5.1E-4 | 836 | 858 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.633 | 837 | 861 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 7.0E-5 | 840 | 858 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 965 aa Download sequence Send to blast |
MLMAETRRYI PDHTINIEQI LEEAKHRWLR PTEILEILRN YQKFKLTAEP PARPAAGSMF 60 LFDRKALRYF RKDGHRWRKK KDGKTVREAH EKLKAGSVDV LHCYYAHGED NENFQRRCYW 120 MLDGQLEHIV FVHYREVKEG YKSGVSRLLE DSGTQVENLQ PSPVTSFAQA ASPASTVQTS 180 YASSPNRIDW NGKALSSEFE DVDSRNGPGT SSLAQSIHGS MSHNSSLLSP RVEAKFDLGT 240 QSSLLPEISS SERSVSRLPG QKFFVDQPGG AEFITNKLTD ATLEGIAVPD TVELDFNLIS 300 PQLHNLSGTQ TVAASTAQVE NKANDGGANN IESGELKKLD SFGRWMDKEI GGDCDDSLMA 360 SDSGNYWSTL SAENEDKEVS SLSHHMQLDT DSLGPSLSQD QLFSIRDFSP DWAYSGVDTK 420 VLIIGTFLGS KKFSSETKWG CMFGEIEVSA EVLNDCVIRC QVPQHAPGRV PFYITCRNRL 480 SCSEVREFEY RENPFGTASL PAESAQQEEI LFQMRLSKLL YLGPGMKSSN CSIEDCERCK 540 ISTLFSLRND SKRDLGKVQD NCMVAVGDGI GFRDKLIQSL LMDRLCEWLA CKVHEGGKGS 600 DVLDGEGQGV IHLAASLGYE WAMDLIVAAG GNPNFRDARG RTALHWASYF GREETVIALI 660 RLDADPTAVD DPNPAFPGGQ SAADLASCRG HKGISGYLAE AFLSRHLSSL KIDQNEMDHD 720 TAAMAAEKET DIAAQVASLS SKGEYELLSL KGSLAAVRKS ARAVALIHAA YRTSSFRQRQ 780 LAKSSDDISE ISLDLAALGS LNMVQRRGHF EDYLHSAAVK IQQKYRGWKG RKDFLKIRNR 840 IVKIQAHVRG HQVRKQYKKV VWSVGIVEKA ILRWRRKRTG LRGFRLEKKI GDVKPESENA 900 DEYDFLRISR KQKFAGVEKA LARVTSMVRH PEAREQYMRM VTKFENIKMG DEGCSVSQQD 960 ESSR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.010G153100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466825.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X4 | ||||
TrEMBL | A0A2K1YUI6 | 0.0 | A0A2K1YUI6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s16290.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G09410.1 | 0.0 | ethylene induced calmodulin binding protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.010G153100.2 |
Entrez Gene | 7485869 |