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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G141000.1 | ||||||||
Common Name | POPTR_0010s15090g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 365aa MW: 40659.6 Da PI: 8.4446 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde l +++ G g+Wk+ ++ g+ R++k+c++rw +yl Potri.010G141000.1 14 KGRWTAEEDEVLTKYILANGEGSWKSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.5e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e +v++++ lG++ W+ Ia+ ++ gRt++++k++w+++l Potri.010G141000.1 67 RGNITKEEEETIVKLHTALGNR-WSFIAAQLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.984 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.59E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.47E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.178 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTAE EDEVLTKYIL ANGEGSWKSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI TKEEEETIVK LHTALGNRWS FIAAQLPGRT DNEIKNYWNS HLSRKIYSFN 120 RYKNDDSLPS IMDITDVAAG PYKGRGGRTS RSSMKKHKAT LISLGKPKSP KAIAHEVTEP 180 ASKETAAISP KGTNSSLKSS ATEGPQKEPE NRKNLGVQVQ ESCIDIAKRI NAAGISHCPI 240 NDEKETETLG PYEWLDSEIK RLEYALQRQV ADPFGNNTVV TLETDNEAPS MSKESENYNG 300 VMGPKRVAVH YLKKQSNSSN GCSSNEESNG EWYNSFSPMN PRFDEEWLDW DWTIAGDLGG 360 WGLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00598 | PBM | Transfer from AT5G49330 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G141000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316017.2 | 0.0 | transcription factor MYB111 | ||||
TrEMBL | B9HWW8 | 0.0 | B9HWW8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s15090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 2e-80 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G141000.1 |
Entrez Gene | 7489413 |