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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G130200.1 | ||||||||
Common Name | POPTR_0010s14030g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 473aa MW: 53009.2 Da PI: 9.5026 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 158.4 | 4e-49 | 104 | 261 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasn 84 +gkkdrhskihT++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aikelt+t s + +a++s+ss+s+ Potri.010G130200.1 104 TGKKDRHSKIHTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKAAIKELTDTvpkvrkcsS-T-----SAGKSVSSTSE 188 79**************************************************************655544421.1.....33333333332 PP TCP 85 sssg.......................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 + ++ s++k+k+s+k ++ + n+ + esr+kararar+rtrekm++k + Potri.010G130200.1 189 ---SevvsgikltpdtngdrrvmeaksDSLVSKPKEKRSKKVHKPVFNPVDrESREKARARARDRTREKMKNKGIN 261 ...1223555566667777888888775555555555555555555666666********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.8E-48 | 104 | 257 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 38.019 | 106 | 164 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.188 | 237 | 254 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MIASTLADPE NPSSIEDYSP TSFLQHFPDL FLDDGDLLVG ELLSQQQQQQ QQPGVFGSNT 60 HVLAVETQEI NPVASNDEST RKFNNSKMKG NVNTSKQPIR QRRTGKKDRH SKIHTAQGPR 120 DRRMRLSLQI ARKFFDLQDM LGFDKASKTI EWLFTKSKAA IKELTDTVPK VRKCSSTSAG 180 KSVSSTSESE VVSGIKLTPD TNGDRRVMEA KSDSLVSKPK EKRSKKVHKP VFNPVDRESR 240 EKARARARDR TREKMKNKGI NKSSQSSQAN PDNLEKFGYS STLEYGENLA SGRQEINSSV 300 KVVDEEEESN NHHHLLPHQM DHVSIIDKFF GITNSPRSSS IFDFSESIEV PSGATLKDEF 360 SGFPLKWDVT NGRVQYKYNA LPNMKLPSGN VQAQNPNVNF MTTPHALEPN LSTMIMTTLN 420 AHVEESPNSA FMNMPNPNEQ NPISILKTTT TIDNGNQFSS SHIFARDYDR LY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G130200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU129192 | 0.0 | GU129192.1 Populus balsamifera TCP transcription factor (TB2) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314886.2 | 0.0 | transcription factor TCP12 | ||||
TrEMBL | A0A2K1YTC7 | 0.0 | A0A2K1YTC7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s14030.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-32 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G130200.1 |
Entrez Gene | 7466923 |