PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G129000.1
Common NamePOPTR_0010s13910g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 276aa    MW: 31096.8 Da    PI: 7.747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G129000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-06113132120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C+k+F+r  n++ H+
  Potri.010G129000.1 113 FTCSVCNKTFNRYNNMQMHM 132
                         89*****************9 PP
2zf-C2H2140.00015198220123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk+F  + + ++H +++
  Potri.010G129000.1 198 FGCRKCGKPFAVRGDWRTHEKNC 220
                         56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.0E-5106135No hitNo description
Gene3DG3DSA:3.30.160.603.5E-6113132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.045113135IPR015880Zinc finger, C2H2-like
PfamPF128744.4E-5113132No hitNo description
PROSITE profilePS5015710.429113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SMARTSM00355220161193IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.21E-5181218No hitNo description
Gene3DG3DSA:3.30.160.606.0E-5184218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140198218IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MQTPSFAYIS SIESAYIEAD DQGDEESLFL SLSPPGQQHI TRHPNHRRSS IHPRNIQENP  60
SNFESGVTIA LHIGPPTAGA RTSNHPDNHI GSLVEGQYWI PSPAQILVGP TQFTCSVCNK  120
TFNRYNNMQM HMWGHGSQYR KGPDSLKGPK QASSTLRLPC YCCAEGCKNN IEHPRSRPLK  180
DFKTLQTHYK RKHGAKPFGC RKCGKPFAVR GDWRTHEKNC GKLWFCICGS DFKHKRSLKD  240
HVRAFGDGHA AHTVDMCHDI DEEEDQEDDI NNMED*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G129000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314883.20.0zinc finger protein WIP6
SwissprotQ9FX681e-122ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLB9HWL60.0B9HWL6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13910.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-124C2H2-like zinc finger protein