PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G125100.1
Common NamePOPTR_0010s13490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 448aa    MW: 49059.7 Da    PI: 4.9116
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G125100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.61.4e-091659340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  Potri.010G125100.1 16 ARACDSCIKKRASWYCAADDAFLCQACDSSVHSAnllarrHERV 59
                        578*****************************667888888876 PP
2CCT67.92.7e-23399442144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Potri.010G125100.1 399 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 442
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.2E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7081461IPR000315B-box-type zinc finger
PfamPF006439.0E-81659IPR000315B-box-type zinc finger
CDDcd000215.59E-101761No hitNo description
PROSITE profilePS5101716.083399441IPR010402CCT domain
PfamPF062036.1E-18399441IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MICNKSLANA VGGRTARACD SCIKKRASWY CAADDAFLCQ ACDSSVHSAN LLARRHERVR  60
LKSASLKSSD AGSKDNSMPS WHGGFTRKAR TPRHGKPVSR SKIEETTRNI PIPLVPEVGS  120
DEISLEDNEE EHLLYRVPIF DPFAAELCTS TTVSNEAGAV VPAGGTDTDQ RAADSSGTES  180
KVLLGGSEGK DVESLHGFLP SDMDLAEFAA DMESLLGRGL ENESFGMEEL GLMDCKEENE  240
LGVKGYPLGN GKVKVEEEED AGMEEKAVRE CHADIEIDIA KDPPFELSFD YDSPATCVEE  300
DEKVGIEEGD LKNSDGEYED DGGAKKKRRT LLSLDYEAVM TAWASQGSPW TNGYRPDFDA  360
DECWPDADCM GICGAQLHHP YGDVSGLGAH PAALVDGGRE ARVSRYREKR RTRLFSKKIR  420
YEVRKLNAEK RPRMKGRFVK RTTFAGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324328KKKRR
2409425RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.1310.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G125100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4772940.0KC477294.1 Populus tomentosa COL6-2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315940.20.0zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A2K1YT280.0A0A2K1YT28_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-103B-box type zinc finger protein with CCT domain