PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G099600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 298aa MW: 33351.4 Da PI: 6.9716 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.6 | 2.7e-33 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l++m+vkgLt++hvkSHLQ+YR+ Potri.010G099600.1 19 PRLRWTPELHHCFVHAIERLGGQDKATPKLVLQMMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.25 | 15 | 75 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-32 | 15 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-16 | 17 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-24 | 19 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-9 | 20 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGSCGRSGAV RQYVRSKVPR LRWTPELHHC FVHAIERLGG QDKATPKLVL QMMDVKGLTI 60 SHVKSHLQMY RSMRSGDLGR LDRSSTQQKR QSFAVYNECV EEVKAIEESD SHSMYRPLSS 120 KRARIETRSS LSEEFLQCSQ GICETISNPY SFDDYAGIKE EVNGVGFKWE QTHSNPQCTA 180 FSLPHDLYNF NPLKREVEES DFLKIAKLEG RKCKPEKLFT PEVTGSGRAE DEEPVDCELS 240 LALSLPQPSS HRSDSSSTSE ISEAFSSYSR SNFKDCSGFS TGKRDINLDL SIALCGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12190 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G099600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024465798.1 | 0.0 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2K1YRP7 | 0.0 | A0A2K1YRP7_POPTR; Uncharacterized protein | ||||
STRING | XP_002521884.1 | 1e-146 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5539 | 33 | 53 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 5e-36 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G099600.1 |