PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G099200.1
Common NamePOPTR_0010s10950g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 613aa    MW: 66607.3 Da    PI: 9.3613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G099200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-057193123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Potri.010G099200.1 71 FICEVCNKGFQREQNLQLHRRGH 93
                        89*******************88 PP
2zf-C2H212.40.00047147169123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Potri.010G099200.1 147 WKCEKCSKKYAVQSDWKAHSKTC 169
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.9E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.89E-77093No hitNo description
PROSITE profilePS5015710.997193IPR007087Zinc finger, C2H2
PfamPF121713.0E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355130112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.89E-7142167No hitNo description
SMARTSM00355140147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MAASSSSAPF FGIREEEQNQ QMKQQHSSTP TSSSAQAPPP QKKKRNQPGT PNPDAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEVRRK VYLCPEPTCV  120
HHEPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARNPPTNL NTIGSHLYGS SNMTLGLSQV GTQISSLQDH  240
NNQSTDILRL GGGGARTGQF DHLLPSSIGS SSFRPPQQMP SPAFFMQEPN QNYHDENQSQ  300
QDLLQNKPFH HGLMQFADIH NTTGNPPSAG NLFNLSFLSN SSTASSISNS NNANNSNSNL  360
PTSGLLMPSH FNNQNGVGGG EGSNIFSNNV MGNQMTSGVP SLYSSSVQND NMVSHMSATA  420
LLQKAAQMGS SSSNNSASLL RSFGSSSSSG NKSDRQLIGG NFSGMFSENE NNLHDLMNSF  480
APGNSSMFGS GHAQENPYGG YTASRTSLEQ EKQHHGPNFG NTSMDEAKLH QSLNASIGGS  540
DRLTRDFLGV GPQIVRSMSG SSGFSQREKQ QQPQRQHHGM DMGGSSLDSE RHNTNISAAP  600
TSQPFGGNGS FQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34143204364Zinc finger protein JACKDAW
5b3h_F2e-34143204364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G099200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084940.0AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378422.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024466896.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024466897.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024466898.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-153IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLU5G1I00.0U5G1I0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-127indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]