PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G099100.1
Common NamePOPTR_0010s10940g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 548aa    MW: 59245.7 Da    PI: 9.8237
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G099100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-057193123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Potri.010G099100.1 71 FICEVCNKGFQREQNLQLHRRGH 93
                        89*******************88 PP
2zf-C2H213.20.00026147169123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Potri.010G099100.1 147 WKCEKCSKRYAVQSDWKAHSKTC 169
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.26E-77093No hitNo description
Gene3DG3DSA:3.30.160.606.0E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527193IPR015880Zinc finger, C2H2-like
PfamPF121712.7E-57193IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355150112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.26E-7142167No hitNo description
SMARTSM00355130147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MAAASSSAPF FGRAREEHQN QIIQQHSSTA TSSTVPTTGP QKKRRNQPGT PNPDAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEVKRK VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYFR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARHPTSLN TIGSHLYGNN HMSLGFSQVG SQISHLQDHH  240
PSGNNMLRLG SAGAANFEHL IPPPNPPSMP MMPPSGFFMG DANQGPFPNK SLHGLMQLPD  300
LQSNTNNPSS ASNLFNFGFF SNNSNTGRTS NNDNANTGST TTNLASPGLL NATQFNNVNG  360
AGQRTSVFPT NMSGDHVGSA MSSFFNTSMQ QENITPHVSA TALLQKAAQM GSTTSSNSPS  420
GLLRSLGSSS TTGAKSIRPL VSTNFGSSFS NANVGESLET HMESESQLQG LMNSLANGSS  480
SIFGNEQDNS YTGFDSSSFS KADEGNMHQG LAGSDKLTLD FLGVGGRVRN IGGGFPQRQQ  540
QNGINNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34143204364Zinc finger protein JACKDAW
5b3h_F1e-34143204364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G099100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2786450.0GU278645.1 Populus balsamifera isolate STL13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786460.0GU278646.1 Populus balsamifera isolate INU03 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786480.0GU278648.1 Populus balsamifera isolate POR11 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786500.0GU278650.1 Populus balsamifera isolate KUU07 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786520.0GU278652.1 Populus balsamifera isolate FBK13 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786530.0GU278653.1 Populus balsamifera isolate FBK13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786540.0GU278654.1 Populus balsamifera isolate FRE01 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786550.0GU278655.1 Populus balsamifera isolate FRE01 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786560.0GU278656.1 Populus balsamifera isolate GAL12 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786570.0GU278657.1 Populus balsamifera isolate GAL12 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786580.0GU278658.1 Populus balsamifera isolate GIL14 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786590.0GU278659.1 Populus balsamifera isolate GIL14 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786600.0GU278660.1 Populus balsamifera isolate LOV02 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786610.0GU278661.1 Populus balsamifera isolate LOV02 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786620.0GU278662.1 Populus balsamifera isolate RNA13 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786630.0GU278663.1 Populus balsamifera isolate RNA13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786640.0GU278664.1 Populus balsamifera isolate STO11 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786650.0GU278665.1 Populus balsamifera isolate STO11 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786660.0GU278666.1 Populus balsamifera isolate WHR03 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786670.0GU278667.1 Populus balsamifera isolate WHR03 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465038.10.0protein indeterminate-domain 5, chloroplastic isoform X1
SwissprotQ8GYC11e-143IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A2K1YRN50.0A0A2K1YRN5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-122indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]