PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G082000.1
Common NamePOPTR_0010s09210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 359aa    MW: 41335.3 Da    PI: 4.9005
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G082000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.57e-36441352102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+i+ed++++++isws+ +nsfvv+d++ f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk+
  Potri.010G082000.1  44 FLTKTYDIIEDSSTNHIISWSRGNNSFVVWDPQAFSISLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKH 125
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++++r+k 
  Potri.010G082000.1 126 LLKTVRRRKA 135
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3838128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.62E-3540133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNRRGRAIKE EYAGGSSSTY SSGMASTAIP QPMEGLHDPG PPPFLTKTYD IIEDSSTNHI  60
ISWSRGNNSF VVWDPQAFSI SLLPRYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  120
RGKKHLLKTV RRRKAPQTQT SQQALEACVE VGTFRLDGEV DRLSRDKQVL MVELVKLRQQ  180
QQTTRACLQL MEQRVKRNEN KQQHMMSFLA RAMQNPTFVQ QLVQQKDMMK ELEEEISKKK  240
RRPIDQGRNN VEVGEFGHGE GVGTFVKIEP REFGGFSEFE VPEFVNLAMN MQELNENQLI  300
NLDEECIEKG EEYENNGKDF DEAFWEDLLN EDIGEQGEDE EDVNVLVEQL GYLGYSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-234213327129Heat shock factor protein 1
5d5v_B7e-234213327129Heat shock factor protein 1
5d5v_D7e-234213327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133KTVRRRK
2237241KKKRR
3237242KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G082000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139850.0KP013985.1 Populus simonii heat shock transcription factor A6b1 (HsfA6b1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465624.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-136HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9HUR10.0B9HUR1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s09210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-131heat shock transcription factor A6B