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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G074500.1 | ||||||||
Common Name | POPTR_0010s08530g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 23851.8 Da PI: 8.3789 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6e-05 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Potri.010G074500.1 56 YTCSFCRREFKSAQALGGHMNVH 78 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.19E-6 | 53 | 82 | No hit | No description |
SMART | SM00355 | 0.0052 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.5E-5 | 56 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.157 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MERNSFSSNL KDHSIGSEAC NNTNSNKKLR DSWNLSSCQS FGEDYLDSLS WPPRSYTCSF 60 CRREFKSAQA LGGHMNVHRR DRARLRRSPP RDAQCPVPNL NPNPSLCPPF TRTLPSLVSP 120 PLSALSTPPL ASEVKKWTID GTPLDPSSSE LSDLTTTGTR KSFFTTENFG GFTQQDGFKI 180 WKKAEIVRLD LEIGLVRDSK DELDLELRLG SLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-13 | 51 | 78 | 2 | 29 | superman protein |
2l1o_A | 3e-13 | 51 | 78 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G074500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC831759 | 0.0 | KC831759.1 Populus ussuriensis SUP1 (SUP1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315719.1 | 1e-155 | transcriptional regulator SUPERMAN | ||||
TrEMBL | B9HUB8 | 1e-154 | B9HUB8_POPTR; Uncharacterized protein | ||||
TrEMBL | M9W9Y8 | 1e-154 | M9W9Y8_9ROSI; SUP1 | ||||
STRING | POPTR_0010s08530.1 | 1e-112 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2843 | 31 | 71 |
Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 2e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G074500.1 |
Entrez Gene | 7498024 |