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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.010G046600.1 |
Common Name | POPTR_0010s05670g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
ERF |
Protein Properties |
Length: 418aa MW: 45651 Da PI: 6.844 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.010G046600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a++ ++g
Potri.010G046600.1 54 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDYAARVMRG 103
59*******.**********93....35999*******************99987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MEEALRRLNG VPSHMPESNS YEPIIADLQK KSAPSTTTNK RSLKEGGGNS GNMRYRGVRR 60 RPWGRYAAEI RDPQSKERRW LGTFDTAEEA ACAYDYAARV MRGIKARTNF VYPETYSATT 120 DSHNLLPPFT FSKSSHHQPS RQYNTVPSSN WSSVGHSHVG DFSAGGSAPQ RSTSGSSANT 180 STLNMLFLRD FVNSSSGSSS QNHSQPLYDH FPCINGSSYS APSTFAGGSL GNPSSNTSST 240 SPYNFSGTLA DSTVTSLPHM EFNQNYTPGV LNSPNSKAEE LEFFPQEPSG SGLLQEIIQG 300 FLPKHSTEKI DFSKSYGESM VAPSAEIISG GQSLDGLRRS TKYFVKNEHQ GAYLDHEGMK 360 SSGQPEGCYR TGVSCHDQVS YDNEMSLNLP VGQDSFLEDI FQYPDLMSAF AARFKNA*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gcc_A | 5e-18 | 55 | 110 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 6e-18 | 43 | 117 | 1 | 76 | Ethylene-responsive transcription factor ERF096 |
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