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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.010G043500.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
TALE |
| Protein Properties |
Length: 310aa MW: 35200.6 Da PI: 4.6184 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.010G043500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 28.4 | 2.7e-09 | 252 | 285 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55
+yp+++++ LA+++gL+++q+ +WF N+R ++
Potri.010G043500.1 252 WPYPTEADKIALAESTGLDQKQINNWFINQRKRH 285
69*****************************885 PP
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| 2 | ELK | 27.1 | 9.6e-10 | 205 | 226 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK+ Llr +++++g+Lk EFs
Potri.010G043500.1 205 ELKDKLLRRFGSHIGTLKLEFS 226
9********************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MDGTYGLHST VADYSDKALM SPEDLILQSE YQSLLSSETL RLRIPILGSE ELLSEAASIR 60
TEEDMSALIK AKIASHPCYP RLLEAYIDCQ KVGAPPGIAC FLDEIRREND LFKQDAVSTY 120
WGADPELDEF METYCDLLVK YKSDLERPFD EATTFLNKIE MQLRNLCTGA SIRSISDEGA 180
PSSDEELSGG ELDMHEAQPS GEDRELKDKL LRRFGSHIGT LKLEFSKKKK KGKLPKEARQ 240
TLLGWWDAHY KWPYPTEADK IALAESTGLD QKQINNWFIN QRKRHWKPSE NLQFAVMDNL 300
SGQFFTEDD*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}. |
| Uniprot | TISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
