PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.010G029000.1

Common Name

POPTR_0010s03000g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 789aa MW: 90350.2 Da PI: 8.4901

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.010G029000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64	4.1e-20	71	145	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA++vGF++r+ + ++s+++g++ +r+fvCskeg++ + +r+gC a ++v+++++gkw+v++++++HnHel Potri.010G029000.1 71 EFYSVYATRVGFRTRTGQLYRSRTDGSVASRRFVCSKEGFQLN--------------SRMGCPAFIRVQRRDSGKWVVDQIHKDHNHEL 145 6*************************************876..............5899*************************9 PP
2	FAR1	68.6	1.5e-21	226	301	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA e+GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++l+++HnH+l p Potri.010G029000.1 226 FYLRYADEAGFKTRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQDSGTWMVDRLQKDHNHDLEP 301 9************************************999..............4899*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-16	71	145	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.2E-17	226	301	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.7E-29	400	492	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.472	674	710	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-7	684	709	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.0E-7	685	712	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MVFDSTPSLF NNTRSSSSDP YSEEYGNAMI VRAHPLGTAR ANNNVNVEGA RGPGLEPCIG 60 LEFDSADDAR EFYSVYATRV GFRTRTGQLY RSRTDGSVAS RRFVCSKEGF QLNSRMGCPA 120 FIRVQRRDSG KWVVDQIHKD HNHELGDVEE SRPPLLPQRT PTGRKSSAKV SSKSKLKFLA 180 EVDDGQPCFS RSISFKRIKP GGDGGQPKAE PYAGLVFSSV DEAFHFYLRY ADEAGFKTRI 240 GQLFRSKNDG SITSRRFVCS KEGFQHPSRV GCGAFMRIKR QDSGTWMVDR LQKDHNHDLE 300 PQTRTHTKSS TASKKFIDEV NGGLDTLDLS EINNGVRSNI SQGNNIGSEW YHLLLDYFQS 360 KQAKDTGFFY SVQVDNGVCM SVFWADGRSR FASSQFGDAI VVDTSYRKTN YLVPFATFVG 420 VNHHKQPVLL GCALIANESK ESFIWLFRTW LRAMSGCRPK SIIADQDMAI QQAIAHVFPG 480 TRHRFSMWQI RAKERENLRS LSNEFKYEYE KCIYDSQTNA DFNTMWNALV NKYGLKENVW 540 LKEMYEKRES WVPLYLRGTF FAGIPLNESM ESLFGIFLNA ETPLVEFIAR YDQGLEQRRE 600 EERKEDFNCS NLQAFLQTKE PIEEQCRRLY TLAVFQLFQK ELLQCYNYLG IKIYEEGTIS 660 RYSVRRCGND SEKHMVTFSA SNLNVSCSCQ MFEFEGVLCR HVLRVFILLN MREIPSHYLL 720 HRWTRNAEHG LVCDVDSGVS CQELKSLMVW SLRETACKYI ESGTTSIEKY RLACEIMREG 780 AKKFCRQR*

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MVFDSTPSLF NNTRSSSSDP YSEEYGNAMI VRAHPLGTAR ANNNVNVEGA RGPGLEPCIG  60
LEFDSADDAR EFYSVYATRV GFRTRTGQLY RSRTDGSVAS RRFVCSKEGF QLNSRMGCPA  120
FIRVQRRDSG KWVVDQIHKD HNHELGDVEE SRPPLLPQRT PTGRKSSAKV SSKSKLKFLA  180
EVDDGQPCFS RSISFKRIKP GGDGGQPKAE PYAGLVFSSV DEAFHFYLRY ADEAGFKTRI  240
GQLFRSKNDG SITSRRFVCS KEGFQHPSRV GCGAFMRIKR QDSGTWMVDR LQKDHNHDLE  300
PQTRTHTKSS TASKKFIDEV NGGLDTLDLS EINNGVRSNI SQGNNIGSEW YHLLLDYFQS  360
KQAKDTGFFY SVQVDNGVCM SVFWADGRSR FASSQFGDAI VVDTSYRKTN YLVPFATFVG  420
VNHHKQPVLL GCALIANESK ESFIWLFRTW LRAMSGCRPK SIIADQDMAI QQAIAHVFPG  480
TRHRFSMWQI RAKERENLRS LSNEFKYEYE KCIYDSQTNA DFNTMWNALV NKYGLKENVW  540
LKEMYEKRES WVPLYLRGTF FAGIPLNESM ESLFGIFLNA ETPLVEFIAR YDQGLEQRRE  600
EERKEDFNCS NLQAFLQTKE PIEEQCRRLY TLAVFQLFQK ELLQCYNYLG IKIYEEGTIS  660
RYSVRRCGND SEKHMVTFSA SNLNVSCSCQ MFEFEGVLCR HVLRVFILLN MREIPSHYLL  720
HRWTRNAEHG LVCDVDSGVS CQELKSLMVW SLRETACKYI ESGTTSIEKY RLACEIMREG  780
AKKFCRQR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.010G029000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006378129.1	0.0	protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	U5G0Z9	0.0	U5G0Z9_POPTR; Uncharacterized protein
STRING	POPTR_0010s03000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Potri.010G029000.1
Entrez Gene	18102315

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]