PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.010G026200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 783aa MW: 87604.3 Da PI: 6.9145 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 117.7 | 5.9e-37 | 132 | 208 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++Cead+se+k yhrrh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k Potri.010G026200.1 132 RCQVPSCEADISELKGYHRRHRVCLGCANATAVVLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 208 6************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.1E-28 | 126 | 194 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.368 | 130 | 207 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-33 | 131 | 210 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-27 | 133 | 207 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 783 aa Download sequence Send to blast |
METSSSSSPP PPPPPQHDGD MEIHLPPVTT EWDWGDLLDF TVDDQFPLSF DTVVDVTQPI 60 DNPTPEVESQ QLEAPVSDRV RKRDPRLTCS NFLAGIVPCA CPEMDELLLE EEAALPGKKR 120 VRVARAGSSI ARCQVPSCEA DISELKGYHR RHRVCLGCAN ATAVVLDGET KRYCQQCGKF 180 HVLSDFDEGK RSCRRKLERH NNRRRRKPAD SSKGSAGDKE VQGDLLTEDT TCDAEAGKDG 240 LWSSSQMVEK EGLVESEDGH ISALNSDPIS QNVNSDSGVS FTASGDTRMD CGKDDSKLPF 300 SPSICDNKSA YSSVCPTGRI SFKLYDWNPA EFPRRLRHQI FQWLASMPVE LEGYIRPGCT 360 ILTAFLAMPT FMWVKLLEDP ASYLNDLLGS GKMLSKKGRM RVYLNNMIFN VTKDGHSVMK 420 VNVKGHAPRL HYVHPTCFEA GKPMEFVVCG SNLLQPKFRF LVSFAGKYLA HDYCVALPQV 480 HTKGGSGLHH QLYKILTHCI EPNLLGPLFI EVENESGLSN FIPVLIGDRD VCFEMKIIQQ 540 RFDVSHSLIF GSECEVSAMR QTAFSEFSTD IAWLLKEPSA ENFQQTITSF QIRRFNSLLS 600 FLLHHESIII LDRILKNLEI MMDKREVNGM FDDTSDTNMR LLQSYMEYAS NILHKKKRSE 660 VLKHHLECPG QEYCVSGSCC VSNKPAVVIS SEGLEQRPDG GLGVMANSKC IVKSEEVPLF 720 NRDERPKKSC GLVFSNRVLK YRPSVFVIAI IAVCFAVCAL LLHPRKVSKL AVSIRRCLTD 780 RY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 7e-43 | 128 | 212 | 1 | 85 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 193 | 205 | RRKLERHNNRRRR |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:24335506}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.010G026200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT029897 | 1e-170 | CT029897.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466516.1 | 0.0 | squamosa promoter-binding-like protein 7 isoform X2 | ||||
Swissprot | Q8S9G8 | 0.0 | SPL7_ARATH; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A2K1YMU5 | 0.0 | A0A2K1YMU5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s02710.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6470 | 34 | 50 | Representative plant | OGRP4828 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18830.3 | 0.0 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.010G026200.1 |