PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G019600.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 667aa MW: 73886.5 Da PI: 4.4514 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.5 | 9.6e-11 | 515 | 557 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k Potri.010G019600.2 515 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 557 59*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.2E-27 | 507 | 589 | No hit | No description |
PROSITE profile | PS51293 | 10.655 | 512 | 560 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-7 | 513 | 561 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.2E-10 | 515 | 564 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.94E-7 | 516 | 557 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-6 | 516 | 557 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MLPVESSGVE NGRLTDHVSE PNMESAGTKE PGRNNGQALL SPPEILATVF CQKDSKGKSS 60 FPAQNFVDSS AFMKCNVVAT DFSSPNEAAV QVDNGRLELE ESGAFPGLET PGFLSPDVME 120 SVMAPPPNVQ PVPSETINID GFSVAAFPSD NIVDSPCTHL DNVTAIHQED ASDLPEKETS 180 SSRKRKAAPV SCSSWKSQKA SLAGDMNEHD KSSRRLTKQA AAPQLGDEPE YEAHGNDDSS 240 MHPGDFLPFD PCTSEFQVDQ NQKDFTESNC LANANVVRSE DVPVVPEKES SKSGKRKVFS 300 ASNCSRKSKK SSLAAGPQVV DELDEAHDNG GLPEAPGSSV DEEDNDYEPR GDEESDDENK 360 VEIASRKKRA SKKSKEPVTE NEKPVRKRNR SNDTAEQSMQ KPGKKFSHST RRNKRCVNKD 420 LLNMPEDEID FKRLPIRDII LFAEYKERLA TTTSKIPPNN QSTDNPFHGE YSHNEEDGFA 480 SEQDITHGDD QTYVRAQPSS SLFNYQSFMD RAPNSRWSKQ DTELFYEGIQ QFGTDLSMIQ 540 QLFPGRTRHQ VKLKYKKEER QHPLRLHEAL SSRPKDNSYF EKLIEQLQEV AGTQEEQESY 600 KDDLVDVSGE EDAELNAETS GEVTKPEQGE NAGVEEEQEE NVAEDHHGPL KSGVSDEDVD 660 DIWGSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 309 | RKVFSASNCSRKSKK |
2 | 367 | 375 | KRASKKSKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G019600.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214213 | 0.0 | AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466756.1 | 0.0 | uncharacterized protein LOC7475967 isoform X6 | ||||
TrEMBL | A0A2K1YMI2 | 0.0 | A0A2K1YMI2_POPTR; Uncharacterized protein | ||||
STRING | XP_002512944.1 | 1e-120 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 1e-45 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G019600.2 |