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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G019600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1097aa MW: 119557 Da PI: 4.5365 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.7 | 1.7e-10 | 945 | 987 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k Potri.010G019600.1 945 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 987 59*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 2.3E-27 | 937 | 1019 | No hit | No description |
PROSITE profile | PS51293 | 10.655 | 942 | 990 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-7 | 943 | 991 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.24E-10 | 945 | 993 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.86E-6 | 946 | 987 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-6 | 946 | 987 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1097 aa Download sequence Send to blast |
MDPDLDPFDD ILPKPALTNA RLGGKFQPKA KPRPKKVEFV PIPFPPSKAK EKAVAASQTS 60 LDTNISVQPF GIMDEKLTCQ IGSLSPSSPT GTKEPLKSND GKTKLVEESG SPLATSDMVG 120 VKEPLKYKEG LSSWEIGSLE AANLSPARIN DAGSVGAMDS EAAISGCNDD QESSFVKSAG 180 VAGSLGFDSD LLDDILPKSL KNNSRAGGKF KPKAKPRQRN ENPAPVSSSP SKCAKEEPKA 240 HSQQTQSTEP VDVANTRMNP DGPTLLQQGN VKSNEPSKDS EILYFNDNSC MELVNPSSEN 300 IATEEDVSPQ NTLLAEMKSG NDVGLNSRLV ESAIEVGSMR LDLDAFDYMD PQPAISTGRA 360 AGKLQSKVKA RPRKGTSELA ASAVPNTAVE KVAGLASTVL DNMLPVESSG VENGRLTDHV 420 SEPNMESAGT KEPGRNNGQA LLSPPEILAT VFCQKDSKGK SSFPAQNFVD SSAFMKCNVV 480 ATDFSSPNEA AVQVDNGRLE LEESGAFPGL ETPGFLSPDV MESVMAPPPN VQPVPSETIN 540 IDGFSVAAFP SDNIVDSPCT HLGDFIPSDP CTSEIRMNQE LKNLTETSRS DNVTAIHQED 600 ASDLPEKETS SSRKRKAAPV SCSSWKSQKA SLAGDMNEHD KSSRRLTKQA AAPQLGDEPE 660 YEAHGNDDSS MHPGDFLPFD PCTSEFQVDQ NQKDFTESNC LANANVVRSE DVPVVPEKES 720 SKSGKRKVFS ASNCSRKSKK SSLAAGPQVV DELDEAHDNG GLPEAPGSSV DEEDNDYEPR 780 GDEESDDENK VEIASRKKRA SKKSKEPVTE NEKPVRKRNR SNDTAEQSMQ KPGKKFSHST 840 RRNKRCVNKD LLNMPEDEID FKRLPIRDII LFAEYKERLA TTTSKIPPNN QSTDNPFHGE 900 YSHNEEDGFA SEQDITHGDD QTYVRAQPSS SLFNYQSFMD RAPNSRWSKQ DTELFYEGIQ 960 QFGTDLSMIQ QLFPGRTRHQ VKLKYKKEER QHPLRLHEAL SSRPKDNSYF EKLIEQLQEV 1020 AGTQEEQESY KDDLVDVSGE EDAELNAETS GEVTKPEQGE NAGVEEEQEE NVAEDHHGPL 1080 KSGVSDEDVD DIWGSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 725 | 739 | RKVFSASNCSRKSKK |
2 | 797 | 805 | KRASKKSKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G019600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214213 | 0.0 | AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466753.1 | 0.0 | uncharacterized protein LOC7475967 isoform X3 | ||||
TrEMBL | A0A2K1YMI7 | 0.0 | A0A2K1YMI7_POPTR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Representative plant | OGRP8075 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 4e-45 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G019600.1 |