PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G004300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 353aa    MW: 39946.8 Da    PI: 8.0383
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G004300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W+++Ede+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Potri.010G004300.1 14 KGLWSPDEDEKLLRYITEHGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding38.62.4e-1267109145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         r r++ +E+ l +++   lG++ W++Ia+ ++ gRt++++k+ w+
  Potri.010G004300.1  67 RTRFSSQEENLVIQLQSVLGNR-WSRIAAQLP-GRTDNEIKNLWN 109
                         789*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.711965IPR017930Myb domain
SuperFamilySSF466891.24E-2712108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001675.45E-111761No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2265117IPR009057Homeodomain-like
SMARTSM007171.8E-1066114IPR001005SANT/Myb domain
PROSITE profilePS5129417.16366116IPR017930Myb domain
PfamPF002491.8E-1067109IPR001005SANT/Myb domain
CDDcd001672.68E-769109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRQSCGYKQ KLRKGLWSPD EDEKLLRYIT EHGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRTRF SSQEENLVIQ LQSVLGNRWS RIAAQLPGRT DNEIKNLWNS SIKKKLMQKG  120
IDPNTHKPLS EVKLSTSKCP EKASRELDTA ISLNLKADSS KPSLIDVSSC KIEKGDDNLN  180
ASKTSAHQEF FPDKSLPFNR YPNIQHSPLD SIAYLQFPVQ QLNHEQLELD QKCSLFEPNQ  240
ELNSRTLVPT ISRSILSAQM DNKIHAGLPF HSMGTFNNIH WDSSNCSSES SEFQKKSLFD  300
SNVFSWGLAD DGGSSDKTLQ LHSADAETTD IKWSEYHNTS FLAEHNQQTL HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G004300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466908.10.0transcription factor MYB8
TrEMBLA0A2I4KKU70.0A0A2I4KKU7_POPTR; MYB family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2810633
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.11e-81myb domain protein 50