 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.010G001000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
ARR-B |
| Protein Properties |
Length: 681aa MW: 74111.3 Da PI: 5.96 |
| Description |
ARR-B family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.010G001000.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 90.5 | 1.5e-28 | 208 | 261 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Potri.010G001000.1 208 KPRVVWSVELHQQFVAAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 261
79*******************.********************************8 PP
|
| 2 | Response_reg | 73.2 | 1e-24 | 29 | 137 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89
vl+vdD+p+ + +l+++l+ y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll+ i e +lp+i+++a + ++ + +
Potri.010G001000.1 29 VLVVDDDPTCLVILEKMLRTCLY-EVTKCNRAEIALSLLRENRngYDIVISDVHMPDMDGFKLLELIGLEM-DLPVIMMSADDGKNVVMKG 117
89*********************.***************99999***********************6644.8****************** PP
HHTTESEEEESS--HHHHHH CS
Response_reg 90 lkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +e+l +
Potri.010G001000.1 118 VTHGACDYLIKPIRIEALKN 137
****************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009873 | Biological Process | ethylene-activated signaling pathway |
| GO:0010082 | Biological Process | regulation of root meristem growth |
| GO:0010119 | Biological Process | regulation of stomatal movement |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0071368 | Biological Process | cellular response to cytokinin stimulus |
| GO:0080113 | Biological Process | regulation of seed growth |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 681 aa
Download sequence Send
to blast |
MLNLGYCKGS MSTASSGGVS DQFPAGLRVL VVDDDPTCLV ILEKMLRTCL YEVTKCNRAE 60
IALSLLRENR NGYDIVISDV HMPDMDGFKL LELIGLEMDL PVIMMSADDG KNVVMKGVTH 120
GACDYLIKPI RIEALKNIWQ HVVRKRKNEW KDLEQSGSVE EGGDRQQKQS EDADYSSSAN 180
EGSWKNSKRR KDEEEEADER DDTSTLKKPR VVWSVELHQQ FVAAVHQLGI DKAVPKKILE 240
LMNVPGLTRE NVASHLQKYR LYLRRLSGVS QHQSGMGNSF INPQEATYGP LSSLNGLDLQ 300
TLAAAGQIPA QSLATLQAAG LGRSTAKPRM PMPIVDQRNL FSFENPKLRF GEGQQQHLNN 360
GKQINLLHGI PTTMEPKQLA DLHHSAQSLG SMNMQLNAHG DQSGQSGSLL MQMSQQQSRG 420
QILNETTSSQ VPRLPSSIGQ PIVTNAIASG VLARNGLAEN GRGTGFNPVS QSSPTLNFPL 480
NTTAELTATS FALGSAPGVP SLTSKGTFPE DISSEMKGPG GFIMPSYDIF SELQHHRSHD 540
WELQNVGMAF NGSQQSNSLQ SNVDVASSVL AHQGFSSSQS NGQGRNISAV SKPIFSAGDA 600
TSHVNAQSLG QPLNTFFAEN LVRVKTERVP DANLQTTLFN EQFGQEDLMS ALLKQQQQAG 660
IGPAEIEFDF DGYSLDNIPV *
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FN908139 | 0.0 | FN908139.1 Populus x canadensis mRNA for putative B-type response regulator 13 (rr13 gene), cultivar Dorskamp. |
| Publications
? help Back to Top |
- Takahashi N, et al.
Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
Curr. Biol., 2013. 23(18): p. 1812-7
[PMID:24035544] - Ge XM, et al.
Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
Plant J., 2015. 82(1): p. 138-50
[PMID:25704455] - Takahashi N,Umeda M
Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
Plant Signal Behav, 2014. 9(8): p. e29396
[PMID:25763620] - Kobayashi K, et al.
Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
Plant Physiol., 2017. 173(4): p. 2340-2355
[PMID:28193764] - Arnaud D, et al.
Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
Plant Cell, 2017. 29(3): p. 543-559
[PMID:28254779] - Zhang TQ, et al.
A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
Plant Cell, 2017. 29(5): p. 1073-1087
[PMID:28389585] - Meng WJ, et al.
Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
Plant Cell, 2017. 29(6): p. 1357-1372
[PMID:28576846] - Zhang F,May A,Irish VF
Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
Trends Plant Sci., 2017. 22(10): p. 815-817
[PMID:28886911] - Takatsuka H,Higaki T,Umeda M
Actin Reorganization Triggers Rapid Cell Elongation in Roots.
Plant Physiol., 2018. 178(3): p. 1130-1141
[PMID:30185441]
|
