PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G170100.2

Common Name

POPTR_0009s17110g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 752aa MW: 86487.1 Da PI: 7.2858

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G170100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.8	1.2e-30	77	168	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ HnHel+ Potri.009G170100.2 77 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRVITRVGCKASLSVKMQDSGKWVVSGFVRGHNHELV 167 9*************************************998888545677889*********************************8 PP FAR1 91 p 91 p Potri.009G170100.2 168 P 168 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-29	77	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-33	289	381	IPR018289	MULE transposase domain
Pfam	PF04434	6.1E-12	557	603	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.226	569	605	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.8E-9	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MENEVLEFDI GLGSGADDDA VDIDIDDDLP STPPLPLPLP SSTSTPPTQI YLPEGDLLDL 60 EPYESMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRRD GAIIQRQFVC AKEGFRNLNE 120 KRTKDREIKR PRVITRVGCK ASLSVKMQDS GKWVVSGFVR GHNHELVPLD QVHCLRSHRQ 180 ISGPAKTLVD TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RQKSMEGDIQ 240 LLLDYLRQMH TENPNFFYAL QGGDDQFTGN VFWSDPRARA NYSYFGDTVT FDTTYRSNRY 300 RLPFAPLTGV NHHGQPVLFG CAFLLNETEA SFIWLFQTWL TAMSGHHPVS ITTDHDAVIS 360 SAIMQVFPKT RHRFCKWHIF KKCQEKLSHV LLKHPSFEAD FHKCVNLTES IEEFESCWLS 420 LVDRYELRHH EWLQTIYSDR RQWVPVYLRD AFFAEMSITQ RSDSMNSYFD GYVNASTNLS 480 HFFKLYEKAI ESRNEKEVKA DYDTMNTNPV LKTPSPMEKQ ASGHYTRKLF ARFQEELVGT 540 LTFMASKAED DGESIMYQVA KFGEDHKAYY VKFNVLEMKA RCSCQMFEFS GLLCRHVLAV 600 FRVTNVLTLP SHYILKRWTR NAKSNVILEE HPSDVYNGYL ESHTVRYNTL RHEAFKFVDE 660 GSKSLDTYNV AMVALQEATT RVALATKNEG RTSVKDMDKK IQELRDELEH ANRKCEVYRA 720 NLLSVLKDIE DHKLQLSIKV QSIKISMKDS I*

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MENEVLEFDI GLGSGADDDA VDIDIDDDLP STPPLPLPLP SSTSTPPTQI YLPEGDLLDL  60
EPYESMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRRD GAIIQRQFVC AKEGFRNLNE  120
KRTKDREIKR PRVITRVGCK ASLSVKMQDS GKWVVSGFVR GHNHELVPLD QVHCLRSHRQ  180
ISGPAKTLVD TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RQKSMEGDIQ  240
LLLDYLRQMH TENPNFFYAL QGGDDQFTGN VFWSDPRARA NYSYFGDTVT FDTTYRSNRY  300
RLPFAPLTGV NHHGQPVLFG CAFLLNETEA SFIWLFQTWL TAMSGHHPVS ITTDHDAVIS  360
SAIMQVFPKT RHRFCKWHIF KKCQEKLSHV LLKHPSFEAD FHKCVNLTES IEEFESCWLS  420
LVDRYELRHH EWLQTIYSDR RQWVPVYLRD AFFAEMSITQ RSDSMNSYFD GYVNASTNLS  480
HFFKLYEKAI ESRNEKEVKA DYDTMNTNPV LKTPSPMEKQ ASGHYTRKLF ARFQEELVGT  540
LTFMASKAED DGESIMYQVA KFGEDHKAYY VKFNVLEMKA RCSCQMFEFS GLLCRHVLAV  600
FRVTNVLTLP SHYILKRWTR NAKSNVILEE HPSDVYNGYL ESHTVRYNTL RHEAFKFVDE  660
GSKSLDTYNV AMVALQEATT RVALATKNEG RTSVKDMDKK IQELRDELEH ANRKCEVYRA  720
NLLSVLKDIE DHKLQLSIKV QSIKISMKDS I*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.5421	7e-62	bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G170100.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464730.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K1Z961	0.0	A0A2K1Z961_POPTR; Uncharacterized protein
STRING	POPTR_0009s17110.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Potri.009G170100.2
Entrez Gene	7463350

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]