PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G158400.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 853aa MW: 95887.9 Da PI: 6.4783

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G158400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.8	3.2e-17	62	133	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GFs+++++ ++ k++g i r+fvC +eg ++++ ++ C+a+l+++++ +gkw+vt++++eHnH+ Potri.009G158400.2 62 FYDEYARRLGFSTKVAHFTRPKTDGAIAAREFVCGREGLKRRSADS--------------CHAMLRIELK-RGKWVVTHFVKEHNHS 133 9************************************9998877..............******.*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-14	62	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-23	253	338	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.165	524	560	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.3E-10	530	558	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	535	562	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence Send to blast
MDVHVIDDEE GTSHRGVAYN GDAEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK 60 TFYDEYARRL GFSTKVAHFT RPKTDGAIAA REFVCGREGL KRRSADSCHA MLRIELKRGK 120 WVVTHFVKEH NHSTVNPNKV HYLRPRRHFA GAAKSAAKTG QGVGVSPSGD GQAATSTAVN 180 YIARSSNQKR TLGRDAQNLL EYFKKMQAEN PGFFYAIQLD DENRMANVFW ADAKSRTAYT 240 HFGDAVTFET SPRVNQYRVP FAPFTGLNHH GQTILFGCAI LLDDSEASFV WLFKTFLTAM 300 YDQQPASLIT NQDKAIQTAV SQVFPDTRHC ISKWHVLREG QEKLAHVCNA HPNFQLELYN 360 CINLTETIEE FENSWIDILD KYDLRGHDWL QSLHDARAQW VPVYFRDSFF AVMCPNQGFD 420 GTFFDGYVNQ QTTLPMFFRQ YERALDNWFE RELEADFDTI CTTPVLRTPS PMEKQAANLY 480 TRKIFAKFQE ELVETFVYTA NRIEGDAAIS TFRVAKFEDD QRAYMVSLNY PEMRANCSCQ 540 MFEYSGILCR HVLTVFTVTN VLTLPPHYIL KRWTRNAKTG AGTDDRGVDL PGQESLTLRY 600 NNLCREAIKY AEEGAIAVET YNAAMGALRE GGKKVAAVKK NVAKVSPPGC QGGGTGNDDW 660 KTSTSASDTT PFLWPLQDEV TRRFNLNDTG NPVQSVADLN LPRMAPVSLQ RDDGPPGNMV 720 LLPCLKSMTW VMENKSSTPG NRVAVINLKL QDYGKTPSTE LEVKFQLSRV TLEPMLRSMA 780 YISEQLSTPA NRVAVINLKL QDTETTTGES EVKFQVSRDT LGAMLRSMAY IREQLSISVE 840 PQAEPPSKKH RK*

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence Send to blast

MDVHVIDDEE GTSHRGVAYN GDAEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK  60
TFYDEYARRL GFSTKVAHFT RPKTDGAIAA REFVCGREGL KRRSADSCHA MLRIELKRGK  120
WVVTHFVKEH NHSTVNPNKV HYLRPRRHFA GAAKSAAKTG QGVGVSPSGD GQAATSTAVN  180
YIARSSNQKR TLGRDAQNLL EYFKKMQAEN PGFFYAIQLD DENRMANVFW ADAKSRTAYT  240
HFGDAVTFET SPRVNQYRVP FAPFTGLNHH GQTILFGCAI LLDDSEASFV WLFKTFLTAM  300
YDQQPASLIT NQDKAIQTAV SQVFPDTRHC ISKWHVLREG QEKLAHVCNA HPNFQLELYN  360
CINLTETIEE FENSWIDILD KYDLRGHDWL QSLHDARAQW VPVYFRDSFF AVMCPNQGFD  420
GTFFDGYVNQ QTTLPMFFRQ YERALDNWFE RELEADFDTI CTTPVLRTPS PMEKQAANLY  480
TRKIFAKFQE ELVETFVYTA NRIEGDAAIS TFRVAKFEDD QRAYMVSLNY PEMRANCSCQ  540
MFEYSGILCR HVLTVFTVTN VLTLPPHYIL KRWTRNAKTG AGTDDRGVDL PGQESLTLRY  600
NNLCREAIKY AEEGAIAVET YNAAMGALRE GGKKVAAVKK NVAKVSPPGC QGGGTGNDDW  660
KTSTSASDTT PFLWPLQDEV TRRFNLNDTG NPVQSVADLN LPRMAPVSLQ RDDGPPGNMV  720
LLPCLKSMTW VMENKSSTPG NRVAVINLKL QDYGKTPSTE LEVKFQLSRV TLEPMLRSMA  780
YISEQLSTPA NRVAVINLKL QDTETTTGES EVKFQVSRDT LGAMLRSMAY IREQLSISVE  840
PQAEPPSKKH RK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.10531	0.0	bud\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G158400.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313618.3	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_024464516.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2K1Z8K8	0.0	A0A2K1Z8K8_POPTR; Uncharacterized protein
STRING	POPTR_0009s16010.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Potri.009G158400.2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]