PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G158400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 903aa    MW: 100980 Da    PI: 6.6096
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G158400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.93e-1762133288
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         fY+eYA+++GFs+++++ ++ k++g i  r+fvC +eg ++++ ++              C+a+l+++++ +gkw+vt++++eHnH+
  Potri.009G158400.1  62 FYDEYARRLGFSTKVAHFTRPKTDGAIAAREFVCGREGLKRRSADS--------------CHAMLRIELK-RGKWVVTHFVKEHNHS 133
                         9**************************************9998877..............**********.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-1462134IPR004330FAR1 DNA binding domain
PfamPF105512.1E-23303388IPR018289MULE transposase domain
PROSITE profilePS5096611.165574610IPR007527Zinc finger, SWIM-type
PfamPF044344.6E-10580608IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8585612IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MDVHVIDDEE GTSHRGVAYN GDAEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK  60
TFYDEYARRL GFSTKVAHFT RPKTDGAIAA REFVCGREGL KRRSADSCHA MLRIELKRGK  120
WVVTHFVKEH NHSTVNPNKV HYLRPRRHFA GAAKSAAKTG QGVGVSPSGD GQAAVVAASG  180
FSQGGGVVPS GVMYLSMDGH RTPVSETNHG VRNTTPAEPN RVVKTSTAVN YIARSSNQKR  240
TLGRDAQNLL EYFKKMQAEN PGFFYAIQLD DENRMANVFW ADAKSRTAYT HFGDAVTFET  300
SPRVNQYRVP FAPFTGLNHH GQTILFGCAI LLDDSEASFV WLFKTFLTAM YDQQPASLIT  360
NQDKAIQTAV SQVFPDTRHC ISKWHVLREG QEKLAHVCNA HPNFQLELYN CINLTETIEE  420
FENSWIDILD KYDLRGHDWL QSLHDARAQW VPVYFRDSFF AVMCPNQGFD GTFFDGYVNQ  480
QTTLPMFFRQ YERALDNWFE RELEADFDTI CTTPVLRTPS PMEKQAANLY TRKIFAKFQE  540
ELVETFVYTA NRIEGDAAIS TFRVAKFEDD QRAYMVSLNY PEMRANCSCQ MFEYSGILCR  600
HVLTVFTVTN VLTLPPHYIL KRWTRNAKTG AGTDDRGVDL PGQESLTLRY NNLCREAIKY  660
AEEGAIAVET YNAAMGALRE GGKKVAAVKK NVAKVSPPGC QGGGTGNDDW KTSTSASDTT  720
PFLWPLQDEV TRRFNLNDTG NPVQSVADLN LPRMAPVSLQ RDDGPPGNMA VLPCLKSMTW  780
VMENKSSTPG NRVAVINLKL QDYGKTPSTE LEVKFQLSRV TLEPMLRSMA YISEQLSTPA  840
NRVAVINLKL QDTETTTGES EVKFQVSRDT LGAMLRSMAY IREQLSISVE PQAEPPSKKH  900
RK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.105310.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G158400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313618.30.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_024464516.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2K1Z8K80.0A0A2K1Z8K8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s16010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]