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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G147700.1 | ||||||||
Common Name | POPTR_0009s14990g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24658.1 Da PI: 8.4791 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.1e-17 | 57 | 108 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++ ++Wv+e+r+p +k+ r+++g+f ++e+Aa+a++ a+++l+ge Potri.009G147700.1 57 PVYRGVRRRN-GNKWVCEVREP---NKKSRIWVGTFKSPEMAARAHDVAALALKGE 108 68*****887.9******9998...347*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.0E-13 | 57 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-27 | 58 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-23 | 58 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-19 | 58 | 116 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.297 | 58 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.00E-26 | 59 | 117 | No hit | No description |
PRINTS | PR00367 | 6.5E-7 | 59 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-7 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEFENYSSSQ SSIRQTLSCK QCNSPDIYNL PRGQERPVAV LKKNKAGRKK FKETRHPVYR 60 GVRRRNGNKW VCEVREPNKK SRIWVGTFKS PEMAARAHDV AALALKGELA ALNFLDSALI 120 LPRAKSSSAR DIQRAALAAT EPFSNMVMSC SNNCCSEKVP NHSNATFFDE EALFNMPGLL 180 DSMAEGLILT PPAMARGVYW DDMACSTDLT LWEDDYLDSQ * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G147700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM013625 | 0.0 | KM013625.1 Populus balsamifera isolate POR10 CBF6 gene, partial cds. | |||
GenBank | KM013626 | 0.0 | KM013626.1 Populus balsamifera isolate POR5 CBF6 gene, partial cds. | |||
GenBank | KM013627 | 0.0 | KM013627.1 Populus balsamifera isolate POR6 CBF6 gene, partial cds. | |||
GenBank | KM013628 | 0.0 | KM013628.1 Populus balsamifera isolate NWL6 CBF6 gene, partial cds. | |||
GenBank | KM013629 | 0.0 | KM013629.1 Populus balsamifera isolate NWL15 CBF6 gene, partial cds. | |||
GenBank | KM013630 | 0.0 | KM013630.1 Populus balsamifera isolate NWL4 CBF6 gene, partial cds. | |||
GenBank | KM013631 | 0.0 | KM013631.1 Populus balsamifera isolate NWL3 CBF6 gene, partial cds. | |||
GenBank | KM013632 | 0.0 | KM013632.1 Populus balsamifera isolate NWL8 CBF6 gene, partial cds. | |||
GenBank | KM013633 | 0.0 | KM013633.1 Populus balsamifera isolate NWL5 CBF6 gene, partial cds. | |||
GenBank | KM013634 | 0.0 | KM013634.1 Populus balsamifera isolate SOU13 CBF6 gene, partial cds. | |||
GenBank | KM013635 | 0.0 | KM013635.1 Populus balsamifera isolate SOU14 CBF6 gene, partial cds. | |||
GenBank | KM013636 | 0.0 | KM013636.1 Populus balsamifera isolate COT5 CBF6 gene, partial cds. | |||
GenBank | KM013637 | 0.0 | KM013637.1 Populus balsamifera isolate COT4 CBF6 gene, partial cds. | |||
GenBank | KM013638 | 0.0 | KM013638.1 Populus balsamifera isolate COT7 CBF6 gene, partial cds. | |||
GenBank | KM013639 | 0.0 | KM013639.1 Populus balsamifera isolate COT6 CBF6 gene, partial cds. | |||
GenBank | KM013640 | 0.0 | KM013640.1 Populus balsamifera isolate COT2 CBF6 gene, partial cds. | |||
GenBank | KM013641 | 0.0 | KM013641.1 Populus balsamifera isolate COT9 CBF6 gene, partial cds. | |||
GenBank | KM013645 | 0.0 | KM013645.1 Populus balsamifera isolate COT3 CBF6 gene, partial cds. | |||
GenBank | KM013647 | 0.0 | KM013647.1 Populus balsamifera isolate SOU15 CBF6 gene, partial cds. | |||
GenBank | KM013648 | 0.0 | KM013648.1 Populus balsamifera isolate SOU1 CBF6 gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464341.1 | 4e-97 | dehydration-responsive element-binding protein 3 | ||||
Swissprot | A2WZI4 | 2e-53 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 2e-53 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A9PL47 | 1e-110 | A9PL47_POPTR; C-repeat binding facor 6 | ||||
STRING | POPTR_0009s14990.1 | 1e-165 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 3e-40 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G147700.1 |
Entrez Gene | 7474939 |
Publications ? help Back to Top | |||
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