PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G129600.1
Common NamePOPTR_0009s13220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 324aa    MW: 35697.7 Da    PI: 6.6819
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G129600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-094087354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +v+ +k+L
  Potri.009G129600.1 40 IQKADREKLRRDRLNEHFVELGNTLDPD----RPKNDKATILADTVQLLKDL 87
                        56789********************997....79**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.7413787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-63887No hitNo description
SuperFamilySSF474591.11E-1238107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1238109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-74087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-64393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDPFTDFNPP PAVPRHVPST HPDPISSEAE LKDSVAARKI QKADREKLRR DRLNEHFVEL  60
GNTLDPDRPK NDKATILADT VQLLKDLNSK VDKLKAEHAA LSEESRELTL EKNDLREEKA  120
SLKSDVENLN IQCQQQLRAT YPWAAMDHSV MMAPPSYPFP MPVPMPPGPI PMHPSMQPYP  180
FYGNQNPAVI HNPCSTFVPY IAPNTLFDQQ SAQHVSSLAQ SASRSHVSVK QDSKNKSSGE  240
SKVEKSKDSN DVTTDLELKT PGSTADQDLT SVQRKSKKST GKESSVTKES SSSRCSSSHS  300
VQDSSSNSVV GNTKVDDLDK REN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G129600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312979.20.0transcription factor bHLH121
SwissprotQ9LT235e-96BH121_ARATH; Transcription factor bHLH121
TrEMBLB9HRA90.0B9HRA9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s13220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.28e-77bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]