PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G125400.1 | ||||||||
Common Name | POPTR_0009s12830g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 601aa MW: 65387 Da PI: 6.9727 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.2 | 2.4e-10 | 427 | 485 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ + l+s++ Potri.009G125400.1 427 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTSQN 485 9*********************************************9998888777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.1E-18 | 423 | 487 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.76 | 425 | 488 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.8E-9 | 427 | 485 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-10 | 427 | 483 | No hit | No description |
SuperFamily | SSF57959 | 3.52E-11 | 427 | 478 | No hit | No description |
CDD | cd14703 | 2.08E-24 | 428 | 477 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MGDTEDANSE MIQRLQSSFG TTQSSSATMS KQPFSLINQL DVSQLNLNQT QLRARHFANF 60 YQNFSGDSNK RVGIPPSHPN QIPPISPYSQ IPVSRPANQQ MSTQNFSMGP THSRSLSQPS 120 SFFCLDSLPP LSPAPFRDSS SPTVSDPIST DVSMEDKDGS SHSLLPPSPF NRGNAPRVGE 180 SLPPRKAHRR SNSDIPFGNV LQCSPPLIPL RGSGGLERSL SGRENPAMAK PAQLVKKEWE 240 RGGESIAEGT GERKSEGDVD DLFSAYMNLD NIDALNSSGT DEKNGNENRE DLDSRASGTK 300 TNGGDSSDNE AESSVNESGG SVPRGGFSSS TEKREGIKRS AGGDIAPTSR HYRSVSMDSF 360 MGKLNFGDES PKLPPSPGTR PGQLSPTNSM DGNAFSLEFG NGEFSGAELK KIMANEKLAE 420 IASTDPKRAK RILANRQSAA RSKERKMRYI SELEHKVQTL QTEATTLSAQ LTLLQRDSVG 480 LTSQNNELKF RLQAMEQQAQ LRDALNEALN GEVRRLKIAT AEQGGDSDPS KGLVQQQLSV 540 NPQMFMQQPR PSQLNRQQLQ QQQQPSASQI NMHQLQQQQQ SSQPQPQQNG STTLKSDSNQ 600 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G125400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313753.2 | 0.0 | transcription factor RF2a | ||||
Refseq | XP_024464437.1 | 0.0 | transcription factor RF2a | ||||
TrEMBL | B9HRE7 | 0.0 | B9HRE7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s12830.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2272 | 34 | 84 |
Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-167 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G125400.1 |
Entrez Gene | 7463986 |