PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G124400.1 | ||||||||
Common Name | POPTR_0009s12730g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | DBB | ||||||||
Protein Properties | Length: 204aa MW: 22650.4 Da PI: 6.6934 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.7 | 4.9e-08 | 3 | 33 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++lfC ++ lC++C ++ H Potri.009G124400.1 3 TICDVCESAAAILFCAADEAALCRSCDEKVH 33 68**************************998 PP | |||||||
2 | zf-B_box | 25 | 3.9e-08 | 53 | 91 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + C+ +e+ ++ ++Ce +++ lC +C + H g H Potri.009G124400.1 53 VPQCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 689**************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.21 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.07E-6 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 2.8E-6 | 3 | 34 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.0E-6 | 54 | 85 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.57E-6 | 54 | 84 | No hit | No description |
PROSITE profile | PS50119 | 8.617 | 56 | 96 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MRTICDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SAVPQCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR MEEQGQQPLD 120 HNETRRDQNQ PLKLTARENK QNHRASPVPM VENNTDSDGK MDNNLIDLNA RPQRIHGQNS 180 TNQENHESSS AVPVGSFKRE PQK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.4957 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G124400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145766 | 0.0 | EF145766.1 Populus trichocarpa clone WS0113_E07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313009.1 | 1e-151 | B-box zinc finger protein 19 isoform X1 | ||||
Refseq | XP_024463705.1 | 1e-151 | B-box zinc finger protein 19 isoform X1 | ||||
Refseq | XP_024463706.1 | 1e-151 | B-box zinc finger protein 19 isoform X2 | ||||
Swissprot | C0SVM5 | 9e-85 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A3N7FND9 | 1e-149 | A0A3N7FND9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s12730.1 | 1e-150 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 | Representative plant | OGRP3352 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 4e-87 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G124400.1 |
Entrez Gene | 7463992 |