|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.009G119700.1 |
Common Name | POPTR_0009s12250g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
bZIP |
Protein Properties |
Length: 156aa MW: 17351.4 Da PI: 8.983 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.009G119700.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 48.7 | 1.6e-15 | 30 | 88 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
++ +r+++NRe+ArrsR RK++ ++ L v++L++eN++ + ++ ++++ ++++++
Potri.009G119700.1 30 RKRKRMISNRESARRSRMRKQKHLDDLVAQVAQLKKENHQIITSINITTQHYLNVEADN 88
6789****************************************999999998887766 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 156 aa
Download sequence Send
to blast |
MASSSGTSSG SSLIQNSGSE ENLQALMDQR KRKRMISNRE SARRSRMRKQ KHLDDLVAQV 60 AQLKKENHQI ITSINITTQH YLNVEADNSI LRAQVSELSH RLEFLNGIIS LLNSSNGLFG 120 DSSIFNEPAA DSFLNPFNMS YLNQPISASA DMFQY*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 29 | 50 | RKRKRMISNRESARRSRMRKQK |
2 | 42 | 49 | RRSRMRKQ |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | EF146155 | 0.0 | EF146155.1 Populus trichocarpa clone WS0115_N18 unknown mRNA. |
GenBank | EF147315 | 0.0 | EF147315.1 Populus trichocarpa clone WS0122_J03 unknown mRNA. |