PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G117300.1
Common NamePOPTR_0009s12000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 441aa    MW: 48496.1 Da    PI: 6.0196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G117300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.9e-10247294455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Potri.009G117300.1 247 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 294
                         8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17241312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-10241298No hitNo description
PROSITE profilePS5088815.618243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-17243310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7247294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MINRALLPAG GGENMLHCTD ITVLERQRAC IKWQQEQQQQ QQVQLQQQEI SYFTELTGVF  60
QQAGFHEGGL SEVVTRSVKP DPGLVDNGWN NDHVVGLGVG PLYDNGSGFE LNYGAISRIS  120
SCPPAAVAAV AAATVKGSES VVSDKISSGV GRESSKKRKV DNKQNNSKVD AEEDTRDKRI  180
KGCAEEGESK ITEKNNNKNS RNNNTNKNNN SNKESSAGNS KDNSKVTEVQ KPDYIHVRAR  240
RGQATDSHSL AERVRREKIS ERMKYLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL  300
SMKLAAVNPR LDFNFDNLFA REQAFPACSV NFPTIGMSSD MTNPAYLQFN PAQQQLVTCC  360
GLDMGTDPPD MGLKRTTSSP ESIPETFLDS SCFTQAHPPP AWDADLQNLY NVAFDQGRQT  420
SFPTQPFTGS IEASNLKMEM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G117300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1466662e-82EF146666.1 Populus trichocarpa clone WS01211_J16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313497.20.0transcription factor bHLH63 isoform X1
TrEMBLB9HQ610.0B9HQ61_POPTR; Uncharacterized protein
STRINGPOPTR_0009s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-66cryptochrome-interacting basic-helix-loop-helix 1