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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G117200.1 | ||||||||
Common Name | POPTR_0009s11990g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 114aa MW: 12864.4 Da PI: 6.5227 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 8e-09 | 12 | 58 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 r +WT+ E +l+ +a +++ ++ +W Ia+ +g ++++++k ++ Potri.009G117200.1 12 RSAWTPRENKLFEKALALFDKDtpdRWQNIAKAVGGVKSAEEVKKHY 58 789********************************668********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 8 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.017 | 10 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 7.4E-9 | 11 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-7 | 12 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.5E-11 | 13 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.17E-6 | 14 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MSSSYQASRN SRSAWTPREN KLFEKALALF DKDTPDRWQN IAKAVGGVKS AEEVKKHYEI 60 LIEDLQHIES GRIPIPKYKS SGSCNNTNEE ESEVQDSDRL PIYVCGKWML LSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-31 | 7 | 90 | 3 | 85 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G117200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313044.2 | 5e-80 | protein RADIALIS-like 4 isoform X1 | ||||
Swissprot | Q1A173 | 1e-31 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | B9HRM5 | 1e-78 | B9HRM5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s11990.1 | 2e-79 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-32 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G117200.1 |
Entrez Gene | 7464026 |