|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.009G108500.2 |
Common Name | POPTR_0009s11170g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
B3 |
Protein Properties |
Length: 331aa MW: 37866.7 Da PI: 9.1262 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.009G108500.2 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 41.2 | 2.9e-13 | 5 | 96 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
ff++l+ s++ +++rl++p +f++++g++ s ++l + g + ++ l k +++ ++ +GW++Fv+ + +g f++F+++g+ f +
Potri.009G108500.2 5 FFQKLILSSTIREKRLRIPDNFVKKFGHD--ISSFVRLIVPGGHVSRIGL--IKADDKLWFHDGWQQFVERFAIHVGYFLIFRYEGNAIF--N 91
899999********************988..6668***************..9*******************************998888..8 PP
EEEE- CS
B3 94 vkvfr 98
v++f+
Potri.009G108500.2 92 VHIFN 96
88875 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MPRPFFQKLI LSSTIREKRL RIPDNFVKKF GHDISSFVRL IVPGGHVSRI GLIKADDKLW 60 FHDGWQQFVE RFAIHVGYFL IFRYEGNAIF NVHIFNLPTS EINYHSNSLS GKRYLAFEEL 120 DNDENAENSG IPPPQLIVNK SYNPPSLQNL FSGSKLNNCI NWSGEDTMRL TKGSNISQVA 180 NESARNVGAH YNELYNSQDE VKLYSPDGET PKPKKRGRKR LKADPNEQQL SSPHDDDSEM 240 RFRFYESASA RKRTVTAEER ERAMNAAKAY APDNPYCRVV LRPSYLYRGC IMGSLYFSYL 300 MGNSGLFDAF TGEAELNLVR DGMNSHWRIT *
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 1e-21 | 243 | 315 | 15 | 90 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-21 | 243 | 315 | 15 | 90 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |