PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G103400.3
Common NamePOPTR_0009s10620g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 466aa    MW: 52956.9 Da    PI: 6.2665
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G103400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.4e-19112200197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f k+l++s+v+   ++ lp +f++ h  +k +++t+ le+esg+++ +++i ++    + l++GWk F+ an+L egD++vF+l++ s+f 
  Potri.009G103400.3 112 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTVFLENESGEEYILNYIAER----TALSGGWKAFCAANNLHEGDVLVFHLVKPSRF- 195
                         89*********************9994.33.5679***************4444....55************************998888. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                          +v ++
  Potri.009G103400.3 196 -KVYIV 200
                         .66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-22106203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-24108202IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-26110201No hitNo description
PfamPF023625.3E-17112200IPR003340B3 DNA binding domain
PROSITE profilePS5086314.043112203IPR003340B3 DNA binding domain
SMARTSM010193.1E-20112203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDAKEDQNTS PKPQLPISNP VPLNTYPRIR RRKPNMSKIK LTQIHEKSPE PEYKTGHELV  60
LYDKSGESRE PRSRKRKKDA FSVFYDSTET KSPAMELAEE IRTNLEAAYP SFAKTLVRSN  120
VTVGFWMHLP MRFCKMHLPK NDTTVFLENE SGEEYILNYI AERTALSGGW KAFCAANNLH  180
EGDVLVFHLV KPSRFKVYIV KGNGSSQGDG EFGIPSSAEK DVKSSKKAEP LKLLPVGHQE  240
ENNQENGLIA VENNKGYVAD QSENESEDRA SETLRVIKLS GPTVDFNNVK GIENFRILLN  300
GFAIDSELSE HHRTKYYELC RSQSSFLHSN LLNSINHKLA VEIIIGTVDI SEGIRSSKLS  360
SSQADYGVWD KTLKGFELLG MKVGFLRERL SRLMSLALES EEAMESECRE VRLEQARVDE  420
EMKSLELRLL KLKETRERLD DEMEILKENA EKHELTFQEA VNAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377RKRKK
27378RKRKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G103400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2295038e-91CU229503.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463707.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2K1Z5T10.0A0A2K1Z5T1_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10620.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-32B3 family protein