PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G103300.2
Common NamePOPTR_0009s10610g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 440aa    MW: 49700.4 Da    PI: 6.2161
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G103300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-1675163298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +k ++ps+v++  +l +pk+f+e++  + +e+++++lede+g+ +e k+    ++  + l++GW++F  ++++ egD+++F+l++  +f  
  Potri.009G103300.2  75 IKHMLPSNVTRVFWLHFPKRFCEAYL-P-KEDTMIVLEDERGKIYETKY--LARK--VGLSAGWRGFSIDHKIMEGDVLIFHLVEPAKF-- 157
                         68899********************5.3.36679***************..4444..45***********************9875555.. PP

                         EEEEE- CS
                  B3  93 vvkvfr 98 
                         +v ++r
  Potri.009G103300.2 158 KVYIVR 163
                         887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-2066164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-2368167IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-2572163No hitNo description
PROSITE profilePS5086313.09874165IPR003340B3 DNA binding domain
SMARTSM010193.8E-1874165IPR003340B3 DNA binding domain
PfamPF023624.9E-1475163IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAVLQVNKQK EKRGRAPKVN GIKKVPSNLS VKSESHTSKR AKIDDLYDNE EVKSDVMMRA  60
KEIQSNLSPE LPSIIKHMLP SNVTRVFWLH FPKRFCEAYL PKEDTMIVLE DERGKIYETK  120
YLARKVGLSA GWRGFSIDHK IMEGDVLIFH LVEPAKFKVY IVRVNDSEEV DGALALLKLE  180
AGVKQMGPIN EAVHVEKLSK VSEEMEDLDF EHLSLDNPEK NNEKNVKLAC LTTFGPISDL  240
YEYESEDLGS ETTDGIRLSK SAVDFKEVKC FEDFDILVNG LVISSELSKP LQTKYYKLCC  300
SQNSFLHDHL LDGLNCKLVV GMLSETINIA DAIRASKLTN SLESFAIWEK TLKAFEGLGM  360
NVGFLLARLG QLMHLSAKSK RYEEATLQRV NAKEEMTTLK AKLLEVKDTI NRLGVEIEKL  420
VVDSENLELK FQEVAKAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G103300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464278.10.0B3 domain-containing protein Os01g0234100
TrEMBLB9HRZ50.0B9HRZ5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10610.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-35B3 family protein