PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G101200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 412aa MW: 44929.8 Da PI: 9.9373 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.1 | 2.2e-14 | 312 | 358 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r+rr++kNRe+A rsR+RK+a++ eLe++v++L++ Nk+L+ + e Potri.009G101200.1 312 RRQRRMIKNRESAARSRARKQAYTLELEDEVAKLKELNKELQRKQAE 358 79************************************999866544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.0E-11 | 308 | 366 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.68 | 310 | 359 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.0E-14 | 312 | 358 | No hit | No description |
Pfam | PF00170 | 2.3E-12 | 312 | 359 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.5E-10 | 312 | 359 | No hit | No description |
CDD | cd14707 | 2.18E-26 | 312 | 366 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 315 | 330 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MDSHWDFKNF GNASPGQGSV RKSPENPPLV RQSSVYSLTF DEFQNTWGGG LQKDFGSMNM 60 DELLKNIWTA EETQAMTNTV GVGGEGSTPD GNLQRQGSLT LPRTLSQKTV DEVWRDLIKE 120 TSGGYSTNWN GFFGELSQLN TNNNNNNTTG LALGFQQPNG NNGLMGTGIM ENNLVSNQPS 180 SLALNVGGIR PSQQLPQPQQ QQPLFPKPAA TVVFASPLHV ANNVQLASPG VRGSVVGIAN 240 RSVNNGLAHS RGMGMVSLAA RGVTVATESP ANRISPDVIA KSNADTSSLS PVPFVFSRGR 300 KPSAALEKVV ERRQRRMIKN RESAARSRAR KQAYTLELED EVAKLKELNK ELQRKQAEIF 360 EMQKNQVWAS LLVLLPFTLN ILGYVFRTIA ACIFGWGIIV SWNCHLLCLY P* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:11884679}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G101200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:16284313}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF405964 | 0.0 | EF405964.1 Populus trichocarpa abscisic acid responsive elements-binding protein 2 (ABF2-1) mRNA, complete cds. | |||
GenBank | EF405965 | 0.0 | EF405965.1 Populus trichocarpa abscisic acid responsive elements-binding protein 2 (ABF2-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464496.1 | 0.0 | LOW QUALITY PROTEIN: ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
Swissprot | Q9M7Q3 | 1e-86 | AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
TrEMBL | A3FM74 | 0.0 | A3FM74_POPTR; Abscisic acid responsive elements-binding protein 2 | ||||
STRING | POPTR_0009s10400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1962 | 34 | 81 | Representative plant | OGRP3984 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34000.2 | 1e-88 | abscisic acid responsive elements-binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G101200.1 |