PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G089600.1
Common NamePOPTR_0009s09270g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 208aa    MW: 22836 Da    PI: 8.41
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G089600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.73.7e-282103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C++lr++C++dCvl++++     p++q++++ +v+k+FG++ ++++++++p+++ + +++sl++eA  r+ +Pv Gavg++++++++
  Potri.009G089600.1   2 SCNGCRILRKGCSEDCVLRQCIewinsPQAQANATVFVAKFFGRAGLMSFISSVPKSQGPSLFRSLLFEAVGRTVNPVTGAVGLLWTGNWH 92 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelall 97 
                         ++q+++ ++l+
  Potri.009G089600.1  93 VCQKAVRTVLR 103
                         ***99887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.2191107IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSCNGCRILR KGCSEDCVLR QCIEWINSPQ AQANATVFVA KFFGRAGLMS FISSVPKSQG  60
PSLFRSLLFE AVGRTVNPVT GAVGLLWTGN WHVCQKAVRT VLRRGTVEPQ PELEGGVFGP  120
EFDNVSECDS FRPPSDHVSS GSKTLKRKRD VDAAKRGPMR TDLDLRLMYQ RVDTPPEESE  180
TTTLESGSGN NCRFHDGGEP KLLRLFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G089600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313905.11e-152LOB domain-containing protein 39 isoform X1
SwissprotQ9SN239e-62LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9HMY41e-151B9HMY4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09270.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-64LOB domain-containing protein 38