 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.009G089600.1 |
| Common Name | POPTR_0009s09270g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
LBD |
| Protein Properties |
Length: 208aa MW: 22836 Da PI: 8.41 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.009G089600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 89.7 | 3.7e-28 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+C++C++lr++C++dCvl++++ p++q++++ +v+k+FG++ ++++++++p+++ + +++sl++eA r+ +Pv Gavg++++++++
Potri.009G089600.1 2 SCNGCRILRKGCSEDCVLRQCIewinsPQAQANATVFVAKFFGRAGLMSFISSVPKSQGPSLFRSLLFEAVGRTVNPVTGAVGLLWTGNWH 92
6****************************************************************************************** PP
DUF260 87 leqlkaelall 97
++q+++ ++l+
Potri.009G089600.1 93 VCQKAVRTVLR 103
***99887765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MSCNGCRILR KGCSEDCVLR QCIEWINSPQ AQANATVFVA KFFGRAGLMS FISSVPKSQG 60
PSLFRSLLFE AVGRTVNPVT GAVGLLWTGN WHVCQKAVRT VLRRGTVEPQ PELEGGVFGP 120
EFDNVSECDS FRPPSDHVSS GSKTLKRKRD VDAAKRGPMR TDLDLRLMYQ RVDTPPEESE 180
TTTLESGSGN NCRFHDGGEP KLLRLFV*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
