PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G089000.1
Common NamePOPTR_0009s09210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 355aa    MW: 38387 Da    PI: 4.6204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G089000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.6e-112803201055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Potri.009G089000.1 280 RKRRERINERLRILQTLVPNG-----TKVDISTMLEEAVQYVKFLQ 320
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14272337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-12275331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-12279324No hitNo description
PfamPF000104.4E-8280320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048766Biological Processroot hair initiation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAEGEWSSLG GMYTSEEADF MAQLLGNCPN QVDSSSNFGV PSSFWPNHEP TTDMEGANEC  60
LFYSLDFANI NLHHFSQGSS SYSGGSGILF PNTSQDSYYM SDSHPILANN NSSMSMDFCM  120
GDSYLVEGDD CSNQEMSNSN EEPGGNQTVA ALPENDFRAK REPEMPASEL PLEDKSSNPP  180
QISKKRSRNS GDAQKNKRNA SSKKSQKVAS TSNNDEGSNA GLNGPASSGC CSEDESNASH  240
ELNRGASSSL SSKGTATLNS SGKTRASRGA ATDPQSLYAR KRRERINERL RILQTLVPNG  300
TKVDISTMLE EAVQYVKFLQ LQIKLLSSED LWMYAPIAYN GMDIGLDHLK VTAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G089000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464380.10.0transcription factor bHLH84
TrEMBLA0A2K1Z5430.0A0A2K1Z543_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-52bHLH family protein