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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G081400.1 | ||||||||
Common Name | POPTR_0009s08500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 338aa MW: 37854.4 Da PI: 7.686 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.3e-12 | 159 | 206 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq Potri.009G081400.1 159 QDHIIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 206 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.91 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-10 | 159 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-17 | 160 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-17 | 160 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.85E-13 | 161 | 210 | No hit | No description |
SMART | SM00353 | 1.0E-14 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
METSSITALY ELGMEDPGFT NQWYMNSLDD ISLLPLAAAA FGENVHHPFS NQNFNLKTSM 60 DSTPTSINVR PTKQMKTFHL SDPQSAFSPN FLSFVNPNHA NQMGLVKPKE EAVCSKSINN 120 FPSDMVVSQD IFGSQNYVIK GCQGPERIST NTPRLSQSQD HIIAERKRRE KLSQRFIALS 180 AVVPGLKKMD KASVLGDAIK YLKQLQEKVK TLEEQTKRKT MESVVIVKKS HIYVDEGDVN 240 ASSDESKGPI HETLPEIEAR FCDKHVLIRI HCEKRKGVLE KTVAEIEKLH LSVINSSVLA 300 FGTSALHVTF IAQMDIDFNM SLKDLVKTLR SAFEFFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-14 | 160 | 209 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 1e-14 | 160 | 209 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 1e-14 | 160 | 209 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 1e-14 | 160 | 209 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 1e-14 | 160 | 209 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 1e-14 | 160 | 209 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 1e-14 | 160 | 209 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 1e-14 | 160 | 209 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 169 | ERKRRE |
2 | 165 | 170 | RKRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G081400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313947.2 | 0.0 | transcription factor bHLH18 isoform X1 | ||||
Swissprot | Q9T072 | 3e-64 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | B9HN59 | 0.0 | B9HN59_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s08500.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 | Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-66 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G081400.1 |
Entrez Gene | 7469672 |