PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G068000.1
Common NamePOPTR_0009s07220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 273aa    MW: 31530.7 Da    PI: 7.1875
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G068000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35251162102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+ +++++sw +++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv +++         weF++++F+kg k+
  Potri.009G068000.1  25 FLTKTYQLVDDPLTDHVVSWGDDETTFVVWRPPEFARELLPNYFKHNNFSSFVRQLNTYGFKKVVTDR---------WEFANEYFRKGAKQ 106
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k+
  Potri.009G068000.1 107 LLSEIHRRKT 116
                         ********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3716108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5621114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.5E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAFTVDRCEE MVFTVESQKA VPAPFLTKTY QLVDDPLTDH VVSWGDDETT FVVWRPPEFA  60
RELLPNYFKH NNFSSFVRQL NTYGFKKVVT DRWEFANEYF RKGAKQLLSE IHRRKTISQH  120
HHQHYPDQAT QFLQSEDHGF GWIDPPFPSP KPNVDHILTA LSEDNQKLRR KNCMLLSELS  180
HMKNLYNDII YFIQNHVKPV PNEQKAYNTV PKLIEPGSSC QDQTICFGVQ RAKNGVLGKH  240
SLTFSTEESS SPVKLFGVPL IDNKRLHPEA IE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-222111617122Heat shock factor protein 1
5d5u_B2e-222111626131Heat shock factor protein 1
5d5v_B2e-222111626131Heat shock factor protein 1
5d5v_D2e-222111626131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171KLRRKN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G068000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140100.0KP014010.1 Populus simonii heat shock transcription factor B4c (HsfB4c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314009.10.0heat stress transcription factor B-4d
SwissprotQ9C6355e-84HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLB9HNI50.0B9HNI5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-86heat shock transcription factor B4