PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G062600.1
Common NamePOPTR_0009s06730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 385aa    MW: 42428.4 Da    PI: 8.1833
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G062600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.9e-093454526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        +C f+++ G+C yG+rC++ H+
  Potri.009G062600.1 34 ICTFYQK-GICVYGSRCRYDHV 54
                        7******.*************7 PP
2zf-CCCH22.12.6e-07141163326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         ++lC+ fa+ G C++Gd+C+ +Hg
  Potri.009G062600.1 141 RSLCS-FAAAGSCPRGDKCPHIHG 163
                         789**.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.892128IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-4327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9252956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00113055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-43453IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075138165IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023139164IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4143163IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.01E-10200271No hitNo description
Gene3DG3DSA:3.30.40.103.3E-10202266IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.34E-4206266No hitNo description
PfamPF136393.9E-7206265IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.475207265IPR001841Zinc finger, RING-type
SMARTSM001845.1E-8207264IPR001841Zinc finger, RING-type
PROSITE patternPS005180231240IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.13294322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582294323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSKRLLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GICVYGSRCR YDHVKPSRPE  60
STASSSLTVL ASTSVSLALP ARTVSSGVRT VLAVPPELSA SSRPFIAPST PAWDLASVQL  120
DFLEDGDGEV IQPRNVKPAD RSLCSFAAAG SCPRGDKCPH IHGDLCAYCG KHCLHPFRPD  180
ERNEHLKACE KKQKNLDLLK YSQEIECSVC LDRVLSKLTA AERKFGLLSE CNHPFCISCI  240
RNWRGSSPTS GMDVNSSLRA CPICRKLSYF VIPSVIWYST KEEKQEIVDT YKEKLRSIDC  300
KHFDFGNGNC PFGTSCFYKH AYRDGRLEEV VLRHLGAEDG QGVIAKNIRL SDFLGGLQIR  360
SSIFGAKPSC LQGWLSGGDS ISGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.173920.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G062600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084790.0AC208479.1 Populus trichocarpa clone JGIACSB1081-D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464899.10.0E3 ubiquitin-protein ligase makorin
SwissprotE0X9N41e-172C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2K1Z3S00.0A0A2K1Z3S0_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-161C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]