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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G048700.1 | ||||||||
Common Name | POPTR_0009s05330g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 471aa MW: 52502.4 Da PI: 6.2987 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 464.4 | 6.5e-142 | 46 | 467 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lLl+cA++v+sg+le+a+ +L+++s+laspdgd+mqR+aayf+eALa+r+++ ++++ kal++++ + +se++ ++klf++++P++ Potri.009G048700.1 46 LIHLLLTCANHVASGSLENAEIALSQISHLASPDGDTMQRIAAYFAEALARRIVKAWPGIDKALNATQIT--LVSEQILVRKLFYDMFPFM 134 689***************************************************************9998..7****************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 k++++++NqaI ea+ege++vH+iD+ + +++QW+aLlqa++ Rpegpp+lRiTg+++ +k l +++++L + Ae+l++pf+fn+ + Potri.009G048700.1 135 KVAFVLTNQAIIEAMEGEKMVHVIDLHAAEPAQWIALLQAFSVRPEGPPHLRITGIHP----QKGVLDQMAHKLIEEAEKLDIPFQFNP-I 220 **********************************************************....9**************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll.........................................................de 216 +++le+l++e Lrvk+gEala++++lqlh++l ++ Potri.009G048700.1 221 VSKLENLDIEILRVKTGEALAISSILQLHSFLasddelrkkspstlknsnginmqrvlqmnqntlgellekdtangyspspdsasssplSS 311 999********************************************************************************88665433 PP GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307 ++s+ + d +L+ +++lsPk++vv+eq+++hn+++++er+leal++y+alfd+le++++r+s er kvE++l+g ei+n++acega+r+e Potri.009G048700.1 312 TASV--KMDCFLNSLWGLSPKLMVVTEQDSNHNGSTLMERLLEALYTYAALFDCLESTVSRTSMERLKVEKMLFGDEIKNIIACEGAARKE 400 3333..4699********************************************************************************* PP GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 rhe+lekW +rl+ aGF++v+ls++ + qa++ll+ ++ dgyr++ee+gs+v++W+drpL+svSaWr Potri.009G048700.1 401 RHEKLEKWIQRLDLAGFGNVSLSYYGMLQARRLLQGYGCDGYRMKEENGSVVICWQDRPLFSVSAWR 467 ******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.938 | 20 | 447 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-139 | 46 | 467 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MYQDDGSSSV TSSPLQVFST MPVSPSMGSP YPWVRELKSE ERGLYLIHLL LTCANHVASG 60 SLENAEIALS QISHLASPDG DTMQRIAAYF AEALARRIVK AWPGIDKALN ATQITLVSEQ 120 ILVRKLFYDM FPFMKVAFVL TNQAIIEAME GEKMVHVIDL HAAEPAQWIA LLQAFSVRPE 180 GPPHLRITGI HPQKGVLDQM AHKLIEEAEK LDIPFQFNPI VSKLENLDIE ILRVKTGEAL 240 AISSILQLHS FLASDDELRK KSPSTLKNSN GINMQRVLQM NQNTLGELLE KDTANGYSPS 300 PDSASSSPLS STASVKMDCF LNSLWGLSPK LMVVTEQDSN HNGSTLMERL LEALYTYAAL 360 FDCLESTVSR TSMERLKVEK MLFGDEIKNI IACEGAARKE RHEKLEKWIQ RLDLAGFGNV 420 SLSYYGMLQA RRLLQGYGCD GYRMKEENGS VVICWQDRPL FSVSAWRCRK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-45 | 46 | 467 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G048700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208940 | 0.0 | AC208940.1 Populus trichocarpa clone JGIACSB1085-L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314093.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | B9HP16 | 0.0 | B9HP16_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s05330.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2383 | 34 | 84 | Representative plant | OGRP2564 | 14 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G048700.1 |
Entrez Gene | 7467395 |
Publications ? help Back to Top | |||
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