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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G045900.1 | ||||||||
Common Name | POPTR_0009s05050g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 202aa MW: 22791.4 Da PI: 6.5291 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.5 | 1e-14 | 15 | 59 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kri n+ r vtfskRr gi KK +EL +L+++e+a ++fs+ gk Potri.009G045900.1 15 KRIVNEDDRLVTFSKRRSGIYKKLSELITLTGTEAAFLVFSPGGK 59 7999**************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.306 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-21 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.12E-23 | 8 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-14 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-18 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-14 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-14 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEAKKTRGRQ KVEMKRIVNE DDRLVTFSKR RSGIYKKLSE LITLTGTEAA FLVFSPGGKP 60 FSFGHPSIEN VLDRFLENPS NADGTHELVE EYRRARIEEL TQKYDEMQQQ LDDDKEKGSK 120 LKDKIQGNER GDWWNAPVEE LNLQELIELE KKFEGLRMTL HSKMKDSSNG ASSSHAPEVG 180 NRSASHANDS NVASHGSNWG V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G045900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313380.1 | 1e-148 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | B9HP41 | 1e-146 | B9HP41_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s05050.1 | 1e-147 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 4e-36 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G045900.1 |
Entrez Gene | 7468563 |