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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G044100.1 | ||||||||
Common Name | POPTR_0009s04870g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 485aa MW: 53530.8 Da PI: 5.5003 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 140 | 186 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l Potri.009G044100.1 140 KGQWTEEEDRKLIRLVKQFGVRKWAQIAERVA-GRAGKQCRERWHNHL 186 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.8e-18 | 192 | 234 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ +lv+a+++ G++ W+ Ia+ ++ gRt++ +k++w+ Potri.009G044100.1 192 KDSWSEEEEIILVEAHTKVGNR-WAEIAKLIP-GRTENAIKNHWN 234 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.268 | 135 | 190 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-30 | 138 | 233 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-17 | 139 | 188 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-27 | 141 | 193 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.0E-19 | 143 | 201 | No hit | No description |
CDD | cd00167 | 1.45E-16 | 143 | 186 | No hit | No description |
SMART | SM00717 | 2.6E-16 | 191 | 239 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.473 | 191 | 241 | IPR017930 | Myb domain |
CDD | cd00167 | 6.55E-13 | 194 | 237 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 194 | 239 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MEGGGEGGGG GRFSHQSLQN NRSIYQPTPP LTATDRFLFC QSHYTPQNIE NDDKSKETLV 60 SINGLCGFSP PSGAIGAVPW QSFSETSFVD GLFVDGDSLN RAYDGNPNGG LSGEVNNVSG 120 KSCKGMGKKT KKGSCATLIK GQWTEEEDRK LIRLVKQFGV RKWAQIAERV AGRAGKQCRE 180 RWHNHLRPDI KKDSWSEEEE IILVEAHTKV GNRWAEIAKL IPGRTENAIK NHWNATKRRQ 240 NSRRKHKQTE SQSGKPQPSI LQDYIRSKNL KNASTSVTST QSTTTNTPSS SISEDPSSQF 300 NYFLPELSES ASDDSPSLLA QSCNDDELLF IQNFFGNKSK EPSSTDKVAT ENPTMEVDNF 360 NADSFNDSLD SSGLYQNSGC QQLKDLSDND FDISTLNPKL CTNGFQAVTD QQTPTYNHLH 420 SDLYLSYLLN GASNAPGSSY TEYGYSSTNM DMEMDQTHPL NGKKEMDLIE MISSSQFSQG 480 IDNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-47 | 138 | 240 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-47 | 138 | 240 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G044100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032290.1 | 0.0 | PREDICTED: transcription factor MYB98 | ||||
TrEMBL | B9HP58 | 0.0 | B9HP58_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s04870.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 2e-69 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G044100.1 |
Entrez Gene | 7481485 |