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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G032900.1 | ||||||||
Common Name | POPTR_0009s03810g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 659aa MW: 74873.6 Da PI: 5.6292 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 346.4 | 4.8e-106 | 286 | 656 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cAeav+s+d+ a +lL++++++++p gd qRla++f +AL+ar+a+++se+y++l++++ + s++ l+a + f +sP++ Potri.009G032900.1 286 RTLLIHCAEAVASNDHGSAIELLTQIRQHSTPFGDGSQRLAHCFSNALEARMAGNGSEVYASLAANRVT---SERILKACRRFISASPFMV 373 679*********************************************************999998888...899999************* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +s+l q+I++ e++ r+Hii f+i + + Wp+L+q L+ Rp+gpp lRiTg++ p++g s+e++ee+g La+++++++vpfe+n+ Potri.009G032900.1 374 MSNLFSTQTIMDLSENAARLHIINFGILYDFPWPSLIQHLSVRPGGPPVLRITGIEFPQTGyrSAETIEEIGLYLASYCDKFNVPFEYNA- 463 ************************************************************9*9***************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +++++e+++le+L+++++E+++V++ ++ +llde+v l+ +r++vL+l+k+++P v+++ + +ns+ F+ rf eal y+s+lfd+le Potri.009G032900.1 464 ISQKWENVQLEDLKIDRDEVTVVSSLYRFRHLLDETVVLNGHRNAVLNLIKRINPAVFIHGIVNGAYNSPFFVSRFREALFYFSSLFDMLE 554 7****************************************************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 a +re+ er + E+e++g+ei nv+aceg +r+er e++++W++r +aGF+++pl+e ++++++ ++ + + + ++++ +++++gWk Potri.009G032900.1 555 AITAREDPERLVFEQEVFGKEILNVIACEGCDRIERPEKYKQWQARNVRAGFRQLPLKEGIMEKVREQVKSSYHKDFLMDQDGQWMLQGWK 645 *************************************************************************888*************** PP GRAS 364 drpLvsvSaWr 374 +r L+++S+W+ Potri.009G032900.1 646 GRILFAISCWK 656 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.162 | 259 | 636 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-103 | 286 | 656 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MNPVFKDPTA DTVLKCISQI LMEEESNEQT FIARDFSLRA AEKPFSDILD QKSSSSDSEV 60 SDPNQIIKTV STHCCNIYGC NSSETADNMV VSSFIHNREA PSVNYTVPLS LQDNSPPFFP 120 ESIFQTFPEQ VDSSVNVALG ASQLDVLFKG GTEETWEFHH QANEMILDFE NNKVTPVMAT 180 KEKSYWDHSA CELKERKNHY KVEKKSETRR NKHSSVYAEA AEQYGMFAEV FPSSGGDDEP 240 VWLNLNETFQ NGPGMIPYLR EQSRGSNYGM LFRKNHVSCR ELVDTRTLLI HCAEAVASND 300 HGSAIELLTQ IRQHSTPFGD GSQRLAHCFS NALEARMAGN GSEVYASLAA NRVTSERILK 360 ACRRFISASP FMVMSNLFST QTIMDLSENA ARLHIINFGI LYDFPWPSLI QHLSVRPGGP 420 PVLRITGIEF PQTGYRSAET IEEIGLYLAS YCDKFNVPFE YNAISQKWEN VQLEDLKIDR 480 DEVTVVSSLY RFRHLLDETV VLNGHRNAVL NLIKRINPAV FIHGIVNGAY NSPFFVSRFR 540 EALFYFSSLF DMLEAITARE DPERLVFEQE VFGKEILNVI ACEGCDRIER PEKYKQWQAR 600 NVRAGFRQLP LKEGIMEKVR EQVKSSYHKD FLMDQDGQWM LQGWKGRILF AISCWKSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-47 | 291 | 655 | 24 | 377 | Protein SCARECROW |
5b3h_D | 4e-47 | 291 | 655 | 24 | 377 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G032900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU272501 | 0.0 | GU272501.1 Populus balsamifera isolate FRE01 haplotype A scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272502 | 0.0 | GU272502.1 Populus balsamifera isolate FRE01 haplotype B scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272503 | 0.0 | GU272503.1 Populus balsamifera isolate GAL12 haplotype A scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272504 | 0.0 | GU272504.1 Populus balsamifera isolate GAL12 haplotype B scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272505 | 0.0 | GU272505.1 Populus balsamifera isolate GIL14 haplotype A scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272506 | 0.0 | GU272506.1 Populus balsamifera isolate GIL14 haplotype B scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272507 | 0.0 | GU272507.1 Populus balsamifera isolate GPR02 haplotype A scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272508 | 0.0 | GU272508.1 Populus balsamifera isolate GPR02 haplotype B scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272509 | 0.0 | GU272509.1 Populus balsamifera isolate INU03 haplotype A scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272510 | 0.0 | GU272510.1 Populus balsamifera isolate INU03 haplotype B scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272511 | 0.0 | GU272511.1 Populus balsamifera isolate KUU07 haplotype A scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272512 | 0.0 | GU272512.1 Populus balsamifera isolate KUU07 haplotype B scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272513 | 0.0 | GU272513.1 Populus balsamifera isolate MGR10 haplotype A scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272514 | 0.0 | GU272514.1 Populus balsamifera isolate MGR10 haplotype B scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272515 | 0.0 | GU272515.1 Populus balsamifera isolate POR11 haplotype A scarecrow-like transcription factor 9 gene, partial sequence. | |||
GenBank | GU272516 | 0.0 | GU272516.1 Populus balsamifera isolate POR11 haplotype B scarecrow-like transcription factor 9 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314170.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | B9HPF6 | 0.0 | B9HPF6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s03810.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-165 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G032900.1 |
Entrez Gene | 7488107 |