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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.009G023600.1 |
Common Name | POPTR_0009s02850g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
HD-ZIP |
Protein Properties |
Length: 384aa MW: 42234.6 Da PI: 6.4265 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.009G023600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 55.5 | 9.8e-18 | 213 | 267 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Potri.009G023600.1 213 RKKLRLSKEQSSFLEESFKEHNTLTPKQKLALAKELNLRPRQVEVWFQNRRARTK 267
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 127.1 | 7.4e-41 | 213 | 303 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlskeq+++LEesF+e+++L+p++K +la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
Potri.009G023600.1 213 RKKLRLSKEQSSFLEESFKEHNTLTPKQKLALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-AL 302
69*************************************************************************************9.55 PP
HD-ZIP_I/II 92 k 92
k
Potri.009G023600.1 303 K 303
5 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MQNKREMELG LSLGDAATTS KPFGFMEKST QLTNKVTSGF CMGLSIGTNH TLQEEDEDKD 60 DHKLSNNIDH NSDNTNTRTA TVQANKGTIL TVDTSTDPPI QLDLLPNTPV PRNQNSILTL 120 ASDNGTNFEA GSSGNMSRGF DVNRFSAVMV HEDQADQDGA TLSSSPPNSA TSSFQMDFCI 180 YSSKGGSGSN IEADQAERAS SRASDEEENG SARKKLRLSK EQSSFLEESF KEHNTLTPKQ 240 KLALAKELNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR RLHKELQELR 300 ALKTSNPYYM QLPATTLTMC PSCERVAAAA TSATATTATT TTTNTQNNTT DPTSNTTGLS 360 LSSSRPRFYP FSHTQTHPHQ PKA*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 261 | 269 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |