PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G018700.1
Common NamePOPTR_0009s02380g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 517aa    MW: 56618.2 Da    PI: 4.8423
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G018700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-174087148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT  Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
  Potri.009G018700.1 40 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87
                        79******************************************9986 PP
2Myb_DNA-binding50.54.6e-1693136146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T+eE+ +++++++ +G++ W++ a++++ gRt++++k++w++
  Potri.009G018700.1  93 KGAFTPEEENRIIELHATMGNK-WARMAAELP-GRTDNEIKNYWNT 136
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7053587IPR017930Myb domain
SuperFamilySSF466896.36E-3037134IPR009057Homeodomain-like
SMARTSM007172.4E-153989IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-244194IPR009057Homeodomain-like
CDDcd001675.57E-124287No hitNo description
PfamPF139211.7E-1543103No hitNo description
PROSITE profilePS5129425.25688142IPR017930Myb domain
SMARTSM007176.6E-1692140IPR001005SANT/Myb domain
CDDcd001671.87E-1195136No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2595140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MSSMMNGSED SKRSKDCRDS PAADEANGGE MMGGMIPLKK GPWTSAEDAI LIDYVKKHGE  60
GNWNAVQKHS GLFRCGKSCR LRWANHLRPD LKKGAFTPEE ENRIIELHAT MGNKWARMAA  120
ELPGRTDNEI KNYWNTRIKR LQRTGLPIYP SDVCLQLYKT IQDGQNMGTL QTGDTCDPDL  180
MQTDHFKIPE VEFKNLELSQ DVLSYSSVLF DTSPSSMLKQ GVGSSYGNAL VFPTIHPAKR  240
LRESQTIFTG LDGCVGRGMP VFDQLTDYPC GKIIEHSGLS SPYDPDLSTY DQPSWDVLPG  300
SHAILNDNSS SSNVPICGTM KLELPSLQYS ESQQDSWGTP TSPLPSLESV DTLIQSPPTK  360
EMRSDGQSPR SSGLLEAVLY EYRTLKNSKK CSGHPTSDVS VVFGGVNVSP LNTSATEWEV  420
YADLNSPSGH SASSLFSECT PVSGSSPDGR AYNVEPEPVD QDLIPYVEAR KAPNQTDCNR  480
PDVLLGSAWF APSNNCHKDQ FFQTDDVVAV LGGDQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31341401106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G018700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313492.20.0transcription factor GAMYB
TrEMBLA0A2K1Z1C50.0A0A2K1Z1C5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20473485
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-90myb domain protein 33