![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.009G017400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 736aa MW: 80239.5 Da PI: 8.6644 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.1 | 1.7e-09 | 429 | 466 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Potri.009G017400.1 429 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 466 554459******************************88 PP | |||||||
2 | BELL | 113.9 | 8.6e-37 | 294 | 364 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 rqelq+kk kL+++l+eV++rY+qy++q+q+v+ssFe++ g g+ak+Yt+lAl++iS++Fr+Lkd i++qi Potri.009G017400.1 294 RQELQMKKGKLVNMLDEVEQRYRQYHHQMQVVVSSFEQASGFGAAKSYTALALQTISKQFRSLKDTISSQI 364 89********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-55 | 220 | 362 | IPR006563 | POX domain |
Pfam | PF07526 | 3.2E-46 | 225 | 361 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.131 | 407 | 470 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 410 | 474 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-12 | 410 | 471 | No hit | No description |
SuperFamily | SSF46689 | 6.84E-17 | 411 | 477 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-29 | 413 | 476 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.1E-18 | 427 | 466 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 736 aa Download sequence Send to blast |
MATYFHGSSE IQAAAAPSDG IQTLYLMNPN YLSSYSDSTQ QQHQQQPPNM IFFNPSSSTA 60 ASNNGLHTGN LPHGPPQNHH FVGIPLAAPS SNITSLTPDS HSRPSLHGVV PSHVHYNIWG 120 SIDQNSVATA CESSAANDVV SPQVGFRRPV AVSPGRQGLS LSLSSQQAPT PPTPYNRAIG 180 NKHHEIQALH PHVSVVSSGD EIRVSGNSPS SVSAVSNGVS GLQNMVLGSR YLRATQELLD 240 EAVNVGKDLI KSGLIEGSSK EKMKMTKESI TGDGSSGGEA YAANRGAELT TAHRQELQMK 300 KGKLVNMLDE VEQRYRQYHH QMQVVVSSFE QASGFGAAKS YTALALQTIS KQFRSLKDTI 360 SSQIRAASKS LGEEDCIGAK VEGSRLRYVD HQLRQQRALQ QLGMVQHNAW RPQRGLPERA 420 VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYAEEI 480 KEQEKTGSEE NANKNENKES RSHSSAPGES STLQMDQRKG VLHSKQPEKP RNQNASPPRF 540 SYPAISMSPM GAPLQQQAGF TLIGPAEMEG ISLRSSKKPS SDMQNSPSSI LSMDMDVKQG 600 ETSREISANF GGERLIKDGY PLITSSGGFG AYPMGDLGRF NLEQMTPRFS GNSVSLSLGL 660 PHCENLSLSG TQQNYHSNQN INQLGGRRLE IGSGTEPDFS GINTSQNSHS STGFESIEMQ 720 NRKRFPAQLL PDFVA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 416 | 474 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 416 | 474 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.009G017400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU232352 | 0.0 | CU232352.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464286.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024464287.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024464288.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024464289.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024464290.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024464291.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A2K1Z190 | 0.0 | A0A2K1Z190_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s02250.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-114 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.009G017400.1 |