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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G007100.1 | ||||||||
Common Name | POPTR_0009s01270g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 38113.5 Da PI: 6.9826 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.5e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl Potri.009G007100.1 14 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.7 | 4.6e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + +++ G++ W+ Ia+ ++ gRt++++k++w++ Potri.009G007100.1 69 GEFSDEEDRVICSLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.788 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.34E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.52E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.829 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRVIC SLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM 120 APQSQRKTPP FPSSDQTDPP LPSHSLLSIY KDSGGSFSYY SQNKSFTGFD PISQIPSSLL 180 SNNNVSFATN SLLFQPTSQE GLFSPMQYYH PAVKDNFLVF GSEASCSSNS DGSCSQISYG 240 RYEIKQEDMG FHSLMSNNGY ENYQNQKFML SYGNHGVENL NQWVEKPNGN TGETPSDYDL 300 VEDVKQLISS SSNNNIIPCN DSLLIDENKT QEKVMYYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1910 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G007100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314299.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | B9HQM8 | 0.0 | B9HQM8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s01270.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-78 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G007100.1 |
Entrez Gene | 7463313 |