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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.008G215600.1 |
| Common Name | POPTR_0008s22750g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
ERF |
| Protein Properties |
Length: 342aa MW: 37641.3 Da PI: 5.3453 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.008G215600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 54.6 | 2.6e-17 | 50 | 98 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+ GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+++++g
Potri.008G215600.1 50 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 98
56******.**********965...5************************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010102 | Biological Process | lateral root morphogenesis |
| GO:0010432 | Biological Process | bract development |
| GO:0010451 | Biological Process | floral meristem growth |
| GO:0010582 | Biological Process | floral meristem determinacy |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MSTSKTFDKP LEGYDTLNIH AGFALLQRNT TPPQTGERRG RRKQAEPGRF LGVRRRPWGR 60
YAAEIRDPTT KERHWLGTFD TAHEAALAYD RAALSMKGTQ ARTNFNYSDN TTFHSLLTPF 120
DIQAFLPQSQ FLTNTQIKQP TNQSSPVKLE TCQNMTPNQS SSDTYAESSD GSAHETNSFF 180
FSNEDSNSGY LGCIVPDNCL RPPPSSTSSK TTKSNASNDQ YSCSMTASTS LEDHSQCNKY 240
APPLEITNVP TKAYTPGNFP GFDELNHGFW GDQLSWDGNS GDLSAMMNNP LMVENVCMDT 300
LYSVDNPPTY GLMPQATSSV SSSSLSYPAY GDAVNFGYSL F*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the early stages of lateral root primordia formation (PubMed:17630277). Expressed in early floral meristem (stage 1 to 2) (PubMed:19482972). {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC182669 | 0.0 | AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence. |
