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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Potri.008G213500.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 688aa MW: 75225.4 Da PI: 6.146 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.3 | 8.4e-29 | 215 | 268 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Potri.008G213500.1 215 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 268
79*******************.********************************8 PP
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| 2 | Response_reg | 77.5 | 4.8e-26 | 36 | 144 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89
vl+vdD+p+ + +l+++l+ +y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + +
Potri.008G213500.1 36 VLVVDDDPTCLVILEKMLRTCRY-EVTKCNRAEIALSLLRENKngYDIVISDVHMPDMDGFKLLEQIGLEM-DLPVIMMSADDGKNVVMKG 124
89*********************.***************999999**********************6654.8****************** PP
HHTTESEEEESS--HHHHHH CS
Response_reg 90 lkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +e+l +
Potri.008G213500.1 125 VTHGACDYLIKPIRIEALKN 144
****************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 3.3E-182 | 10 | 668 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 3.56E-35 | 33 | 158 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 8.5E-42 | 33 | 187 | No hit | No description |
| SMART | SM00448 | 2.2E-29 | 34 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.505 | 35 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 3.8E-23 | 36 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.04E-26 | 37 | 149 | No hit | No description |
| PROSITE profile | PS51294 | 10.737 | 212 | 271 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 5.02E-20 | 213 | 272 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.4E-30 | 214 | 273 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 9.9E-25 | 215 | 268 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 9.9E-8 | 217 | 267 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 688 aa Download sequence Send to blast |
MMNLANCKGS MSTATSGGVW KASDGASDQF PAGLRVLVVD DDPTCLVILE KMLRTCRYEV 60 TKCNRAEIAL SLLRENKNGY DIVISDVHMP DMDGFKLLEQ IGLEMDLPVI MMSADDGKNV 120 VMKGVTHGAC DYLIKPIRIE ALKNIWQHVV RKRKNEWKDL EQSGSVEEGG DRQQKQPEDA 180 DYSSSANEGS WKNSKRRKDE EEEAEERDDT SALKKPRVVW SVELHQQFVA AVNQLGIDKA 240 VPKKILELMN VPGLTRENVA SHLQKYRLYL RRLSGVSQHQ NGMGSSFISP QEATYGPLSS 300 LNGLDLQTLA TAGQLPAQSL ATLQAAGLGR STAKPRMPMP IVDQRNLFSF ENPKLRFGEG 360 QQQHLNNGKQ TNLLHGIPTT MEPKQLANLH HSAQSLGSMN MQFNAHAGQS SSLLMQMSQQ 420 QSRGQILNET THSHVPRLSS SIGQPIASNA LASGVLTRNG LAENGRGIGF NPVSQSSTLL 480 NFPLNTTAEL TATSFPLGSA AEVPSLTSKG TFQEEISSEI KGTGGFMPSY DIFSDLQQHR 540 SHDWELQNVG MTFNGSQQSN SVQSNLDVAP SVLSHQGFSS CQSNGQSRNN ISVVGKPMFS 600 AGDATEHVNA QSLEHPINTF FAENSMRVKT ERVPDANPQT ALFNGQFGQE DLMSALLKQQ 660 QQQQQGGIGL AENEFDFDGY SLDNIPV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 1e-22 | 211 | 274 | 1 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Potri.008G213500.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FN908138 | 0.0 | FN908138.1 Populus x canadensis mRNA for putative B-type response regulator 12 (rr12 gene), cultivar Dorskamp. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024463226.1 | 0.0 | two-component response regulator ARR2 isoform X1 | ||||
| Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
| TrEMBL | A0A2K1ZL33 | 0.0 | A0A2K1ZL33_POPTR; Two-component response regulator | ||||
| STRING | POPTR_0008s22990.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3958 | 34 | 58 |
| Representative plant | OGRP292 | 17 | 120 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G16110.1 | 0.0 | response regulator 2 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Potri.008G213500.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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